HL_4V6I_089

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_089 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2125

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V6I|1|DA|C|2568
4V6I|1|DA|A|2569
4V6I|1|DA|U|2570
4V6I|1|DA|U|2571
4V6I|1|DA|C|2572
4V6I|1|DA|G|2573

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Bi

60S ribosomal protein rpL34 (L34e)