HL_4V6I_090

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V6I|1|DA|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_090 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.2517

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

4V6I|1|DA|C|2616
4V6I|1|DA|U|2617
4V6I|1|DA|G|2618
4V6I|1|DA|G|2619
4V6I|1|DA|G|2620
4V6I|1|DA|G|2621
4V6I|1|DA|C|2622
4V6I|1|DA|G|2623
4V6I|1|DA|G|2624

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BI

60S ribosomal protein rpL10 (L10e)

Chain BU

60S ribosomal protein rpL21 (L21e)

Chain CB

Transfer RNA; tRNA