HL_4V6I_091

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

4V6I|1|DA|C|2644

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_091 not in the Motif Atlas

Geometric match to HL_4V9F_056

Geometric discrepancy: 0.1845

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

4V6I|1|DA|U|2633
4V6I|1|DA|U|2634
4V6I|1|DA|A|2635
4V6I|1|DA|A|2636
4V6I|1|DA|A|2637
4V6I|1|DA|C|2638
4V6I|1|DA|G|2639
4V6I|1|DA|A|2640
4V6I|1|DA|U|2641
4V6I|1|DA|A|2642
4V6I|1|DA|A|2643
4V6I|1|DA|C|2644
4V6I|1|DA|G|2645

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BI

60S ribosomal protein rpL10 (L10e)

Chain BU

60S ribosomal protein rpL21 (L21e)