HL_4V6I_093

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_093 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.2362

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

4V6I|1|DA|C|2693
4V6I|1|DA|A|2694
4V6I|1|DA|A|2695
4V6I|1|DA|A|2696
4V6I|1|DA|A|2697
4V6I|1|DA|G|2698
4V6I|1|DA|G|2699
4V6I|1|DA|G|2700

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BI

60S ribosomal protein rpL10 (L10e)

Chain BU

60S ribosomal protein rpL21 (L21e)

Chain CB

Transfer RNA; tRNA