HL_4V6I_094

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UUCAGUGUG

Length

9 nucleotides

Bulged bases

4V6I|1|DA|A|2727

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|U|2724
4V6I|1|DA|U|2725
4V6I|1|DA|C|2726
4V6I|1|DA|A|2727
4V6I|1|DA|G|2728
4V6I|1|DA|U|2729
4V6I|1|DA|G|2730
4V6I|1|DA|U|2731
4V6I|1|DA|G|2732

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BO

60S ribosomal protein rpL28 (L15p)

Chain BR

60S ribosomal protein rpL18 (L18e)

Chain BU

60S ribosomal protein rpL21 (L21e)

Chain Br

60S ribosomal protein rpL42 (L44e)