HL_4V6I_100

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_100 not in the Motif Atlas

Homologous match to HL_8C3A_065

Geometric discrepancy: 0.0989

The information below is about HL_8C3A_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V6I|1|DA|C|2963
4V6I|1|DA|G|2964
4V6I|1|DA|U|2965
4V6I|1|DA|G|2966
4V6I|1|DA|A|2967
4V6I|1|DA|G|2968

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein rpL2 (L2p)

Chain CB

Transfer RNA; tRNA