HL_4V6I_103
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 4V6I|1|DA|G|3116
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6I_103 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.1477
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
4V6I|1|DA|C|3110
4V6I|1|DA|U|3111
4V6I|1|DA|G|3112
4V6I|1|DA|A|3113
4V6I|1|DA|A|3114
4V6I|1|DA|C|3115
4V6I|1|DA|G|3116
4V6I|1|DA|C|3117
4V6I|1|DA|C|3118
4V6I|1|DA|U|3119
4V6I|1|DA|C|3120
4V6I|1|DA|U|3121
4V6I|1|DA|A|3122
4V6I|1|DA|A|3123
4V6I|1|DA|G|3124
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BF
- 60S ribosomal protein rpL9 (L6p)
- Chain BK
- 60S ribosomal protein rpL16 (L13p)
- Chain Bd
- 60S ribosomal protein rpL29 (L29e)
- Chain Bz
- Unknown protein
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