HL_4V6I_111

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CGUCCG

Length

6 nucleotides

Bulged bases

4V6I|1|DC|C|39, 4V6I|1|DC|C|40

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_111 not in the Motif Atlas

Homologous match to HL_5J7L_203

Geometric discrepancy: 0.5758

The information below is about HL_5J7L_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V6I|1|DC|C|36
4V6I|1|DC|G|37
4V6I|1|DC|U|38
4V6I|1|DC|C|39
4V6I|1|DC|C|40
4V6I|1|DC|G|41

Current chains

Chain DC

5S rRNA

Nearby chains

Chain BE

60S ribosomal protein rpL11 (L5p)

Chain BQ

60S ribosomal protein rpL5 (L18p)

Chain DA

Large subunit ribosomal RNA; LSU rRNA