HL_4V6I_115

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AGGAUUGACAGAUUGAGAGCUCUUUCUUGAUU

Length

32 nucleotides

Bulged bases

4V6I|1|CA|G|1229, 4V6I|1|CA|A|1230, 4V6I|1|CA|U|1231, 4V6I|1|CA|U|1232, 4V6I|1|CA|A|1234, 4V6I|1|CA|U|1247, 4V6I|1|CA|C|1248, 4V6I|1|CA|U|1249, 4V6I|1|CA|U|1250, 4V6I|1|CA|U|1251, 4V6I|1|CA|C|1252, 4V6I|1|CA|U|1253, 4V6I|1|CA|U|1254, 4V6I|1|CA|G|1255, 4V6I|1|CA|A|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|A|1227
4V6I|1|CA|G|1228
4V6I|1|CA|G|1229
4V6I|1|CA|A|1230
4V6I|1|CA|U|1231
4V6I|1|CA|U|1232
4V6I|1|CA|G|1233
4V6I|1|CA|A|1234
4V6I|1|CA|C|1235
4V6I|1|CA|A|1236
4V6I|1|CA|G|1237
4V6I|1|CA|A|1238
4V6I|1|CA|U|1239
4V6I|1|CA|U|1240
4V6I|1|CA|G|1241
4V6I|1|CA|A|1242
4V6I|1|CA|G|1243
4V6I|1|CA|A|1244
4V6I|1|CA|G|1245
4V6I|1|CA|C|1246
4V6I|1|CA|U|1247
4V6I|1|CA|C|1248
4V6I|1|CA|U|1249
4V6I|1|CA|U|1250
4V6I|1|CA|U|1251
4V6I|1|CA|C|1252
4V6I|1|CA|U|1253
4V6I|1|CA|U|1254
4V6I|1|CA|G|1255
4V6I|1|CA|A|1256
4V6I|1|CA|U|1257
4V6I|1|CA|U|1258

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AN

40S ribosomal protein rpS29 (S14p)

Chain AQ

40S ribosomal protein rpS17 (S17e)

Chain AR

40S ribosomal protein rpS15 (S19p)

Chain AZ

40S ribosomal protein rpS30 (S30e)