HL_4V6I_118

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UCCUUGUUACUUAAUUGAACGUGGACA

Length

27 nucleotides

Bulged bases

4V6I|1|DA|A|1079, 4V6I|1|DA|A|1080

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|U|1067
4V6I|1|DA|C|1068
4V6I|1|DA|C|1069
4V6I|1|DA|U|1070
4V6I|1|DA|U|1071
4V6I|1|DA|G|1072
4V6I|1|DA|U|1073
4V6I|1|DA|U|1074
4V6I|1|DA|A|1075
4V6I|1|DA|C|1076
4V6I|1|DA|U|1077
4V6I|1|DA|U|1078
4V6I|1|DA|A|1079
4V6I|1|DA|A|1080
4V6I|1|DA|U|1081
4V6I|1|DA|U|1082
4V6I|1|DA|G|1083
4V6I|1|DA|A|1084
4V6I|1|DA|A|1085
4V6I|1|DA|C|1086
4V6I|1|DA|G|1087
4V6I|1|DA|U|1088
4V6I|1|DA|G|1089
4V6I|1|DA|G|1090
4V6I|1|DA|A|1091
4V6I|1|DA|C|1092
4V6I|1|DA|A|1093

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BQ

60S ribosomal protein rpL5 (L18p)

Chain BU

60S ribosomal protein rpL21 (L21e)

Chain By

Unknown protein