HL_4V6I_119

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

4V6I|1|DA|U|1348, 4V6I|1|DA|G|1349, 4V6I|1|DA|A|1350, 4V6I|1|DA|U|1351, 4V6I|1|DA|A|1352, 4V6I|1|DA|U|1353, 4V6I|1|DA|G|1354, 4V6I|1|DA|A|1355, 4V6I|1|DA|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|U|1347
4V6I|1|DA|U|1348
4V6I|1|DA|G|1349
4V6I|1|DA|A|1350
4V6I|1|DA|U|1351
4V6I|1|DA|A|1352
4V6I|1|DA|U|1353
4V6I|1|DA|G|1354
4V6I|1|DA|A|1355
4V6I|1|DA|U|1356
4V6I|1|DA|G|1357

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein rpL4 (L4p)

Chain BG

60S ribosomal protein rpL6 (L6e)

Chain BR

60S ribosomal protein rpL18 (L18e)