HL_4V6I_122

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

4V6I|1|CA|G|337

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_122 not in the Motif Atlas

Homologous match to HL_8P9A_197

Geometric discrepancy: 0.302

The information below is about HL_8P9A_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6I|1|CA|G|330
4V6I|1|CA|A|331
4V6I|1|CA|U|332
4V6I|1|CA|A|333
4V6I|1|CA|G|334
4V6I|1|CA|U|335
4V6I|1|CA|G|336
4V6I|1|CA|G|337
4V6I|1|CA|C|338

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AP

40S ribosomal protein rpS11 (S17p)