HL_4V6I_123
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 4V6I|1|CA|A|1600
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6I_123 not in the Motif Atlas
- Homologous match to HL_8P9A_223
- Geometric discrepancy: 0.4008
- The information below is about HL_8P9A_223
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|CA|G|1594
4V6I|1|CA|U|1595
4V6I|1|CA|C|1596
4V6I|1|CA|A|1597
4V6I|1|CA|U|1598
4V6I|1|CA|C|1599
4V6I|1|CA|A|1600
4V6I|1|CA|G|1601
4V6I|1|CA|C|1602
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AI
- 40S ribosomal protein rpS16 (S9p)
- Chain AJ
- 40S ribosomal protein rpS20 (S10p)
- Chain AM
- 40S ribosomal protein rpS18 (S13p)
- Chain AN
- 40S ribosomal protein rpS29 (S14p)
- Chain AS
- 40S ribosomal protein rpS19 (S19e)
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