HL_4V6K_010

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_010 not in the Motif Atlas

Homologous match to HL_7RQB_008

Geometric discrepancy: 0.2232

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

4V6K|1|AB|C|246
4V6K|1|AB|G|247
4V6K|1|AB|G|248
4V6K|1|AB|C|249
4V6K|1|AB|G|250
4V6K|1|AB|A|251
4V6K|1|AB|G|252

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AM

50S ribosomal protein L15

Chain AY

50S ribosomal protein L28

Chain Af

50S ribosomal protein L35