4V6K Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_4V6K_110 | 1/AA/34:48 | No text annotation | homologous HL_4V9F_074 HL_97756.2 | |
HL_4V6K_001 | 1/AA/38:44 | No text annotation | geometric HL_5TBW_006 NA | |
HL_4V6K_002 | 1/AA/85:91 | No text annotation | geometric HL_6D12_001 HL_48417.5 | |
HL_4V6K_003 | 1/AB/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
HL_4V6K_004 | 1/AB/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
HL_4V6K_005 | 1/AB/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
HL_4V6K_006 | 1/AB/137:142 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
HL_4V6K_007 | 1/AB/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
HL_4V6K_008 | 1/AB/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
HL_4V6K_009 | 1/AB/225:230 | No text annotation | homologous HL_4WF9_007 HL_53890.2 | |
HL_4V6K_010 | 1/AB/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
HL_4V6K_011 | 1/AB/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
HL_4V6K_012 | 1/AB/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.5 | |
HL_4V6K_013 | 1/AB/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
HL_4V6K_014 | 1/AB/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
HL_4V6K_015 | 1/AB/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
HL_4V6K_016 | 1/AB/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
HL_4V6K_017 | 1/AB/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
HL_4V6K_117 | 1/AB/541:552 | No text annotation | ||
HL_4V6K_019 | 1/AB/564:577 | No text annotation | ||
HL_4V6K_020 | 1/AB/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
HL_4V6K_021 | 1/AB/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
HL_4V6K_022 | 1/AB/641:647 | No text annotation | geometric HL_8H9D_001 NA | |
HL_4V6K_023 | 1/AB/712:719 | No text annotation | homologous HL_9DFE_020 HL_81538.2 | |
HL_4V6K_024 | 1/AB/744:753 | No text annotation | homologous HL_5J7L_155 HL_88205.2 | |
HL_4V6K_025 | 1/AB/779:785 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
HL_4V6K_026 | 1/AB/826:831 | No text annotation | homologous HL_7A0S_024 HL_55195.3 | |
HL_4V6K_027 | 1/AB/885:891 | GNRA | geometric HL_5J7L_026 HL_93535.1 | |
HL_4V6K_111 | 1/AB/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.7 | |
HL_4V6K_029 | 1/AB/977:986 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
HL_4V6K_030 | 1/AB/1064:1074 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
HL_4V6K_031 | 1/AB/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
HL_4V6K_032 | 1/AB/1172:1177 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
HL_4V6K_033 | 1/AB/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.7 | |
HL_4V6K_034 | 1/AB/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.8 | |
HL_4V6K_035 | 1/AB/1324:1330 | Pseudoknot geometry with 3' bulge | geometric HL_7A0S_033 HL_57176.2 | |
HL_4V6K_036 | 1/AB/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
HL_4V6K_037 | 1/AB/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
HL_4V6K_038 | 1/AB/1450:1461 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
HL_4V6K_039 | 1/AB/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
HL_4V6K_040 | 1/AB/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
HL_4V6K_041 | 1/AB/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
HL_4V6K_042 | 1/AB/1612:1619 | No text annotation | homologous HL_5J7L_173 HL_89567.2 | |
HL_4V6K_043 | 1/AB/1629:1637 | GNRA with extra cWW | homologous HL_4WF9_039 HL_20167.2 | |
HL_4V6K_044 | 1/AB/1691:1696 | UNCG | geometric HL_4WF9_040 HL_34617.5 | |
HL_4V6K_045 | 1/AB/1728:1731 | Mini UNCG | geometric HL_6JOO_002 HL_48778.2 | |
HL_4V6K_046 | 1/AB/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
HL_4V6K_047 | 1/AB/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
HL_4V6K_048 | 1/AB/1806:1811 | No text annotation | homologous HL_4WF9_044 NA | |
HL_4V6K_049 | 1/AB/1868:1873 | No text annotation | homologous HL_4WF9_045 NA | |
HL_4V6K_050 | 1/AB/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
HL_4V6K_051 | 1/AB/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
HL_4V6K_052 | 1/AB/2027:2036 | No text annotation | geometric HL_4WF9_047 HL_61996.2 | |
HL_4V6K_053 | 1/AB/2143:2148 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
HL_4V6K_054 | 1/AB/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
HL_4V6K_055 | 1/AB/2247:2257 | No text annotation | ||
HL_4V6K_056 | 1/AB/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
HL_4V6K_118 | 1/AB/2304:2312 | No text annotation | ||
HL_4V6K_058 | 1/AB/2324:2331 | Pseudoknot geometry | homologous HL_4WF9_052 HL_93324.4 | |
HL_4V6K_059 | 1/AB/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
HL_4V6K_060 | 1/AB/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
HL_4V6K_061 | 1/AB/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
HL_4V6K_062 | 1/AB/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_32735.2 | |
HL_4V6K_063 | 1/AB/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
HL_4V6K_064 | 1/AB/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
HL_4V6K_065 | 1/AB/2594:2599 | GNRA | homologous HL_5J7L_196 HL_37824.7 | |
HL_4V6K_066 | 1/AB/2658:2663 | GNRA | geometric HL_5TBW_048 NA | |
HL_4V6K_119 | 1/AB/2701:2706 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_65794.5 | |
HL_4V6K_068 | 1/AB/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
HL_4V6K_069 | 1/AB/2796:2800 | Mini UNCG | geometric HL_4V88_192 NA | |
HL_4V6K_070 | 1/AB/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
HL_4V6K_071 | 1/AB/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
HL_4V6K_072 | 1/BA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
HL_4V6K_073 | 1/BA/82:87 | No text annotation | geometric HL_7RQB_009 NA | |
HL_4V6K_074 | 1/BA/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
HL_4V6K_075 | 1/BA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
HL_4V6K_076 | 1/BA/207:212 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
HL_4V6K_077 | 1/BA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
HL_4V6K_078 | 1/BA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
HL_4V6K_079 | 1/BA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
HL_4V6K_080 | 1/BA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
HL_4V6K_081 | 1/BA/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
HL_4V6K_082 | 1/BA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
HL_4V6K_083 | 1/BA/462:470 | No text annotation | geometric HL_4V9F_019 HL_80922.2 | |
HL_4V6K_114 | 1/BA/522:527 | GNRA variation | homologous HL_5J7L_205 HL_37824.7 | |
HL_4V6K_085 | 1/BA/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
HL_4V6K_086 | 1/BA/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
HL_4V6K_087 | 1/BA/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
HL_4V6K_088 | 1/BA/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
HL_4V6K_120 | 1/BA/840:846 | No text annotation | ||
HL_4V6K_090 | 1/BA/862:867 | GNRA | homologous HL_6CZR_090 NA | |
HL_4V6K_091 | 1/BA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
HL_4V6K_092 | 1/BA/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
HL_4V6K_093 | 1/BA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
HL_4V6K_094 | 1/BA/1028:1033 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
HL_4V6K_095 | 1/BA/1076:1081 | GNRA | homologous HL_6CZR_095 NA | |
HL_4V6K_096 | 1/BA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
HL_4V6K_097 | 1/BA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
HL_4V6K_098 | 1/BA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
HL_4V6K_099 | 1/BA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
HL_4V6K_100 | 1/BA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
HL_4V6K_101 | 1/BA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
HL_4V6K_102 | 1/BA/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
HL_4V6K_103 | 1/BA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
HL_4V6K_104 | 1/BB/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
HL_4V6K_115 | 1/BB/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
HL_4V6K_106 | 1/BB/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_28252.8 | |
HL_4V6K_107 | 1/BE/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
HL_4V6K_116 | 1/BE/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
HL_4V6K_109 | 1/BE/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5IBB_211 HL_28252.8 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4V6K_018 | No text annotation | ||
HL_4V6K_028 | No text annotation | ||
HL_4V6K_112 | No text annotation | ||
HL_4V6K_113 | No text annotation | ||
HL_4V6K_057 | No text annotation | ||
HL_4V6K_067 | No text annotation | ||
HL_4V6K_084 | No text annotation | ||
HL_4V6K_089 | No text annotation | ||
HL_4V6K_105 | No text annotation | ||
HL_4V6K_108 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_4V6K_001 | 1/AA/17:18, 1/AA/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.6 | |
IL_4V6K_002 | 1/AA/23:28, 1/AA/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
IL_4V6K_171 | 1/AA/30:31, 1/AA/51:54 | No text annotation | homologous IL_8P9A_366 IL_15052.4 | |
IL_4V6K_004 | 1/AA/34:38, 1/AA/44:48 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.11 | |
IL_4V6K_005 | 1/AA/71:79, 1/AA/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
IL_4V6K_006 | 1/AB/24:30, 1/AB/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
IL_4V6K_007 | 1/AB/36:37, 1/AB/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
IL_4V6K_187 | 1/AB/43:44, 1/AB/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
IL_4V6K_009 | 1/AB/82:85, 1/AB/97:104 | No text annotation | ||
IL_4V6K_010 | 1/AB/183:184, 1/AB/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
IL_4V6K_011 | 1/AB/188:194, 1/AB/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
IL_4V6K_012 | 1/AB/239:245, 1/AB/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
IL_4V6K_013 | 1/AB/269:271, 1/AB/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
IL_4V6K_014 | 1/AB/274:281, 1/AB/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
IL_4V6K_015 | 1/AB/293:295, 1/AB/343:347 | No text annotation | homologous IL_4WF9_014 IL_69440.3 | |
IL_4V6K_016 | 1/AB/481:484, 1/AB/496:509 | No text annotation | geometric IL_4WF9_015 IL_81516.2 | |
IL_4V6K_017 | 1/AB/536:539, 1/AB/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
IL_4V6K_018 | 1/AB/606:610, 1/AB/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
IL_4V6K_019 | 1/AB/672:674, 1/AB/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
IL_4V6K_020 | 1/AB/674:678, 1/AB/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
IL_4V6K_021 | 1/AB/697:698, 1/AB/763:765 | Single bulged A | homologous IL_5J7L_261 IL_31462.6 | |
IL_4V6K_188 | 1/AB/702:703, 1/AB/728:730 | Single bulged G | homologous IL_5J7L_262 IL_00225.13 | |
IL_4V6K_023 | 1/AB/703:707, 1/AB/724:728 | Triple sheared | homologous IL_5J7L_263 IL_50730.2 | |
IL_4V6K_024 | 1/AB/738:740, 1/AB/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
IL_4V6K_025 | 1/AB/775:777, 1/AB/787:791 | Multiple bulged bases | homologous IL_7A0S_021 IL_06549.2 | |
IL_4V6K_189 | 1/AB/843:848, 1/AB/930:935 | No text annotation | ||
IL_4V6K_190 | 1/AB/850:851, 1/AB/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
IL_4V6K_028 | 1/AB/856:862, 1/AB/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
IL_4V6K_029 | 1/AB/862:863, 1/AB/913:915 | No text annotation | ||
IL_4V6K_030 | 1/AB/864:868, 1/AB/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
IL_4V6K_031 | 1/AB/870:872, 1/AB/905:907 | Isolated cWS basepair | homologous IL_7RQB_030 NA | |
IL_4V6K_032 | 1/AB/875:879, 1/AB/898:902 | No text annotation | ||
IL_4V6K_033 | 1/AB/880:881, 1/AB/895:897 | No text annotation | homologous IL_5J7L_275 NA | |
IL_4V6K_034 | 1/AB/994:996, 1/AB/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
IL_4V6K_035 | 1/AB/998:1002, 1/AB/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
IL_4V6K_036 | 1/AB/1004:1011, 1/AB/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
IL_4V6K_037 | 1/AB/1011:1013, 1/AB/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
IL_4V6K_038 | 1/AB/1017:1024, 1/AB/1140:1145 | No text annotation | ||
IL_4V6K_039 | 1/AB/1024:1030, 1/AB/1124:1140 | No text annotation | homologous IL_5J7L_281 IL_50715.3 | |
IL_4V6K_040 | 1/AB/1031:1034, 1/AB/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
IL_4V6K_041 | 1/AB/1038:1041, 1/AB/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
IL_4V6K_042 | 1/AB/1043:1051, 1/AB/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
IL_4V6K_043 | 1/AB/1059:1062, 1/AB/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
IL_4V6K_044 | 1/AB/1087:1090, 1/AB/1101:1102 | No text annotation | homologous IL_6PRV_002 NA | |
IL_4V6K_045 | 1/AB/1196:1198, 1/AB/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.3 | |
IL_4V6K_046 | 1/AB/1202:1206, 1/AB/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
IL_4V6K_047 | 1/AB/1208:1215, 1/AB/1234:1238 | Kink-turn | homologous IL_7A0S_043 IL_70923.9 | |
IL_4V6K_048 | 1/AB/1310:1313, 1/AB/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
IL_4V6K_173 | 1/AB/1319:1323, 1/AB/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
IL_4V6K_050 | 1/AB/1351:1355, 1/AB/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
IL_4V6K_051 | 1/AB/1357:1361, 1/AB/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
IL_4V6K_052 | 1/AB/1415:1416, 1/AB/1582:1587 | No text annotation | ||
IL_4V6K_053 | 1/AB/1417:1421, 1/AB/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
IL_4V6K_054 | 1/AB/1432:1435, 1/AB/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
IL_4V6K_055 | 1/AB/1437:1440, 1/AB/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
IL_4V6K_056 | 1/AB/1468:1471, 1/AB/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
IL_4V6K_057 | 1/AB/1474:1478, 1/AB/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
IL_4V6K_058 | 1/AB/1480:1483, 1/AB/1506:1511 | No text annotation | ||
IL_4V6K_059 | 1/AB/1489:1491, 1/AB/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
IL_4V6K_060 | 1/AB/1526:1529, 1/AB/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
IL_4V6K_061 | 1/AB/1651:1656, 1/AB/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
IL_4V6K_062 | 1/AB/1663:1665, 1/AB/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
IL_4V6K_063 | 1/AB/1666:1669, 1/AB/1993:1994 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_50694.7 | |
IL_4V6K_175 | 1/AB/1666:1674, 1/AB/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
IL_4V6K_064 | 1/AB/1669:1674, 1/AB/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
IL_4V6K_065 | 1/AB/1686:1691, 1/AB/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_47346.2 | |
IL_4V6K_066 | 1/AB/1712:1718, 1/AB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
IL_4V6K_067 | 1/AB/1720:1724, 1/AB/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
IL_4V6K_068 | 1/AB/1727:1728, 1/AB/1731:1733 | Single bulged C | homologous IL_5J7L_311 IL_61258.15 | |
IL_4V6K_069 | 1/AB/1770:1771, 1/AB/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.6 | |
IL_4V6K_070 | 1/AB/1798:1804, 1/AB/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
IL_4V6K_071 | 1/AB/1837:1840, 1/AB/1902:1903 | No text annotation | homologous IL_4WF9_070 NA | |
IL_4V6K_072 | 1/AB/1841:1842, 1/AB/1898:1901 | Major groove intercalation | homologous IL_4WF9_071 IL_82107.4 | |
IL_4V6K_073 | 1/AB/1846:1849, 1/AB/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
IL_4V6K_176 | 1/AB/1851:1860, 1/AB/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
IL_4V6K_074 | 1/AB/1864:1867, 1/AB/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
IL_4V6K_075 | 1/AB/1933:1934, 1/AB/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 IL_22551.4 | |
IL_4V6K_076 | 1/AB/1934:1945, 1/AB/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
IL_4V6K_077 | 1/AB/2050:2052, 1/AB/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
IL_4V6K_078 | 1/AB/2054:2056, 1/AB/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
IL_4V6K_177 | 1/AB/2067:2069, 1/AB/2442:2443 | Single bulged U | homologous IL_9DFE_080 IL_89505.4 | |
IL_4V6K_081 | 1/AB/2070:2071, 1/AB/2438:2441 | Minor groove platform | geometric IL_7RQB_081 NA | |
IL_4V6K_082 | 1/AB/2081:2083, 1/AB/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
IL_4V6K_083 | 1/AB/2085:2087, 1/AB/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
IL_4V6K_084 | 1/AB/2103:2105, 1/AB/2184:2186 | Isolated non-canonical cWW pair | geometric IL_4J39_001 IL_87907.2 | |
IL_4V6K_191 | 1/AB/2108:2110, 1/AB/2179:2181 | Isolated non-canonical cWW pair | homologous IL_3U4M_001 IL_28037.2 | |
IL_4V6K_086 | 1/AB/2110:2120, 1/AB/2178:2179 | No text annotation | ||
IL_4V6K_178 | 1/AB/2124:2137, 1/AB/2154:2174 | No text annotation | ||
IL_4V6K_087 | 1/AB/2202:2204, 1/AB/2220:2221 | No text annotation | ||
IL_4V6K_088 | 1/AB/2350:2353, 1/AB/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
IL_4V6K_089 | 1/AB/2401:2403, 1/AB/2414:2415 | Major groove platform | homologous IL_7A0S_082 IL_48076.6 | |
IL_4V6K_179 | 1/AB/2454:2455, 1/AB/2496:2498 | Major groove platform | homologous IL_9DFE_092 IL_48076.6 | |
IL_4V6K_180 | 1/AB/2457:2459, 1/AB/2493:2494 | Major groove platform | homologous IL_5J7L_393 IL_07039.3 | |
IL_4V6K_091 | 1/AB/2459:2461, 1/AB/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 IL_51387.2 | |
IL_4V6K_092 | 1/AB/2466:2470, 1/AB/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
IL_4V6K_181 | 1/AB/2507:2508, 1/AB/2580:2582 | Major groove platform | homologous IL_5J7L_394 IL_07039.3 | |
IL_4V6K_094 | 1/AB/2510:2513, 1/AB/2571:2578 | No text annotation | ||
IL_4V6K_095 | 1/AB/2522:2523, 1/AB/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
IL_4V6K_097 | 1/AB/2591:2592, 1/AB/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
IL_4V6K_098 | 1/AB/2636:2640, 1/AB/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
IL_4V6K_099 | 1/AB/2652:2658, 1/AB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 IL_16458.4 | |
IL_4V6K_100 | 1/AB/2680:2684, 1/AB/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
IL_4V6K_101 | 1/AB/2687:2691, 1/AB/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
IL_4V6K_102 | 1/AB/2695:2696, 1/AB/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
IL_4V6K_103 | 1/AB/2737:2742, 1/AB/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
IL_4V6K_104 | 1/AB/2806:2811, 1/AB/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
IL_4V6K_105 | 1/AB/2838:2839, 1/AB/2878:2880 | Major groove intercalation | homologous IL_4WF9_106 IL_66635.5 | |
IL_4V6K_106 | 1/AB/2843:2846, 1/AB/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
IL_4V6K_107 | 1/AB/2847:2852, 1/AB/2865:2869 | No text annotation | homologous IL_7A0S_101 IL_70411.2 | |
IL_4V6K_108 | 1/BA/30:32, 1/BA/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
IL_4V6K_109 | 1/BA/44:45, 1/BA/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.6 | |
IL_4V6K_110 | 1/BA/47:52, 1/BA/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
IL_4V6K_111 | 1/BA/54:56, 1/BA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
IL_4V6K_112 | 1/BA/63:66, 1/BA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
IL_4V6K_113 | 1/BA/67:69, 1/BA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
IL_4V6K_114 | 1/BA/70:73, 1/BA/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
IL_4V6K_115 | 1/BA/75:76, 1/BA/93:95 | Single bulged G | geometric IL_5DEA_002 IL_00225.13 | |
IL_4V6K_116 | 1/BA/128:131, 1/BA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
IL_4V6K_117 | 1/BA/132:136, 1/BA/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
IL_4V6K_118 | 1/BA/144:146, 1/BA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
IL_4V6K_119 | 1/BA/147:153, 1/BA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
IL_4V6K_192 | 1/BA/202:206, 1/BA/213:215 | No text annotation | homologous IL_5J7L_013 IL_66997.2 | |
IL_4V6K_121 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
IL_4V6K_122 | 1/BA/249:252, 1/BA/274:275 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
IL_4V6K_123 | 1/BA/292:294, 1/BA/303:308 | No text annotation | ||
IL_4V6K_124 | 1/BA/367:369, 1/BA/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
IL_4V6K_125 | 1/BA/371:376, 1/BA/387:390 | No text annotation | ||
IL_4V6K_126 | 1/BA/409:416, 1/BA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
IL_4V6K_127 | 1/BA/440:442, 1/BA/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
IL_4V6K_128 | 1/BA/446:450, 1/BA/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
IL_4V6K_129 | 1/BA/450:455, 1/BA/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
IL_4V6K_130 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
IL_4V6K_131 | 1/BA/515:521, 1/BA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
IL_4V6K_132 | 1/BA/569:575, 1/BA/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
IL_4V6K_133 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
IL_4V6K_134 | 1/BA/594:596, 1/BA/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
IL_4V6K_135 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
IL_4V6K_193 | 1/BA/605:612, 1/BA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
IL_4V6K_137 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
IL_4V6K_138 | 1/BA/659:660, 1/BA/745:747 | Minor groove platform | geometric IL_4V88_412 NA | |
IL_4V6K_139 | 1/BA/662:666, 1/BA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
IL_4V6K_182 | 1/BA/673:677, 1/BA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
IL_4V6K_141 | 1/BA/684:688, 1/BA/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
IL_4V6K_142 | 1/BA/774:778, 1/BA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
IL_4V6K_143 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
IL_4V6K_144 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
IL_4V6K_145 | 1/BA/922:923, 1/BA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
IL_4V6K_146 | 1/BA/925:928, 1/BA/1389:1391 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
IL_4V6K_147 | 1/BA/933:935, 1/BA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
IL_4V6K_148 | 1/BA/952:954, 1/BA/1226:1229 | Isolated non-canonical cWW pair | geometric IL_4WF9_018 IL_07785.1 | |
IL_4V6K_149 | 1/BA/993:997, 1/BA/1044:1045 | Minor groove platform | homologous IL_5J7L_043 IL_47078.3 | |
IL_4V6K_150 | 1/BA/998:999, 1/BA/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
IL_4V6K_151 | 1/BA/1048:1050, 1/BA/1208:1209 | Single bulged U | geometric IL_3MEI_001 IL_89505.4 | |
IL_4V6K_183 | 1/BA/1052:1056, 1/BA/1204:1206 | No text annotation | homologous IL_6CZR_154 NA | |
IL_4V6K_153 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
IL_4V6K_154 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged A | homologous IL_5J7L_049 IL_31462.6 | |
IL_4V6K_184 | 1/BA/1060:1063, 1/BA/1193:1197 | Tandem non-canonical cWW pairs | geometric IL_5C5W_001 IL_77658.1 | |
IL_4V6K_155 | 1/BA/1061:1063, 1/BA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
IL_4V6K_156 | 1/BA/1124:1128, 1/BA/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
IL_4V6K_157 | 1/BA/1129:1132, 1/BA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
IL_4V6K_194 | 1/BA/1158:1161, 1/BA/1175:1181 | No text annotation | geometric IL_4LFB_050 IL_42032.1 | |
IL_4V6K_159 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
IL_4V6K_160 | 1/BA/1255:1258, 1/BA/1277:1282 | No text annotation | ||
IL_4V6K_161 | 1/BA/1259:1263, 1/BA/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
IL_4V6K_162 | 1/BA/1303:1308, 1/BA/1329:1334 | No text annotation | geometric IL_4V88_462 NA | |
IL_4V6K_163 | 1/BA/1399:1401, 1/BA/1501:1504 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
IL_4V6K_164 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
IL_4V6K_185 | 1/BA/1405:1407, 1/BA/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
IL_4V6K_186 | 1/BA/1407:1409, 1/BA/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
IL_4V6K_195 | 1/BA/1412:1414, 1/BA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
IL_4V6K_167 | 1/BA/1416:1420, 1/BA/1480:1484 | No text annotation | ||
IL_4V6K_168 | 1/BA/1430:1435, 1/BA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
IL_4V6K_169 | 1/BA/1440:1442, 1/BA/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.6 | |
IL_4V6K_170 | 1/BA/1445:1448, 1/BA/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4V6K_003 | No text annotation | ||
IL_4V6K_172 | No text annotation | ||
IL_4V6K_008 | Isolated non-canonical cWW pair | ||
IL_4V6K_022 | No text annotation | ||
IL_4V6K_026 | No text annotation | ||
IL_4V6K_027 | No text annotation | ||
IL_4V6K_049 | No text annotation | ||
IL_4V6K_174 | No text annotation | ||
IL_4V6K_079 | No text annotation | ||
IL_4V6K_080 | No text annotation | ||
IL_4V6K_085 | Tandem non-canonical cWW pairs | ||
IL_4V6K_090 | Decoding loop related | ||
IL_4V6K_093 | No text annotation | ||
IL_4V6K_096 | No text annotation | ||
IL_4V6K_120 | No text annotation | ||
IL_4V6K_136 | No text annotation | ||
IL_4V6K_140 | No text annotation | ||
IL_4V6K_152 | No text annotation | ||
IL_4V6K_158 | No text annotation | ||
IL_4V6K_165 | No text annotation | ||
IL_4V6K_166 | Tandem non-canonical cWW pairs |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_4V6K_001 | 1/AA/10:16, 1/AA/68:70, 1/AA/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
J3_4V6K_002 | 1/AB/30:31, 1/AB/474:481, 1/AB/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
J3_4V6K_027 | 1/AB/30:31, 1/AB/474:484, 1/AB/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
J3_4V6K_028 | 1/AB/32:35, 1/AB/445:461, 1/AB/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
J3_4V6K_003 | 1/AB/56:57, 1/AB/70:76, 1/AB/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
J3_4V6K_004 | 1/AB/683:689, 1/AB/773:775, 1/AB/791:794 | No text annotation | homologous J3_4WF9_002 J3_64189.2 | |
J3_4V6K_005 | 1/AB/698:700, 1/AB/732:736, 1/AB/760:763 | No text annotation | homologous J3_4WF9_003 J3_44724.7 | |
J3_4V6K_029 | 1/AB/1054:1058, 1/AB/1080:1087, 1/AB/1102:1105 | No text annotation | ||
J3_4V6K_007 | 1/AB/1298:1303, 1/AB/1625:1627, 1/AB/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
J3_4V6K_008 | 1/AB/1306:1309, 1/AB/1605:1611, 1/AB/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
J3_4V6K_030 | 1/AB/1344:1350, 1/AB/1381:1385, 1/AB/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
J3_4V6K_031 | 1/AB/1424:1429, 1/AB/1564:1565, 1/AB/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
J3_4V6K_032 | 1/AB/2091:2093, 1/AB/2196:2200, 1/AB/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
J3_4V6K_033 | 1/AB/2282:2284, 1/AB/2384:2395, 1/AB/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
J3_4V6K_010 | 1/AB/2295:2299, 1/AB/2317:2323, 1/AB/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
J3_4V6K_011 | 1/AB/2517:2520, 1/AB/2545:2547, 1/AB/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
J3_4V6K_012 | 1/AB/2789:2791, 1/AB/2805:2806, 1/AB/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
J3_4V6K_013 | 1/AB/2812:2815, 1/AB/2831:2836, 1/AB/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
J3_4V6K_014 | 1/BA/46:47, 1/BA/361:367, 1/BA/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
J3_4V6K_034 | 1/BA/46:52, 1/BA/359:367, 1/BA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
J3_4V6K_015 | 1/BA/586:588, 1/BA/651:654, 1/BA/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
J3_4V6K_035 | 1/BA/586:588, 1/BA/651:655, 1/BA/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
J3_4V6K_016 | 1/BA/672:673, 1/BA/717:725, 1/BA/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
J3_4V6K_017 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
J3_4V6K_018 | 1/BA/936:939, 1/BA/1344:1350, 1/BA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
J3_4V6K_019 | 1/BA/943:946, 1/BA/1235:1237, 1/BA/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
J3_4V6K_036 | 1/BA/955:962, 1/BA/973:984, 1/BA/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
J3_4V6K_021 | 1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
J3_4V6K_037 | 1/BA/990:997, 1/BA/1044:1047, 1/BA/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
J3_4V6K_022 | 1/BA/1003:1006, 1/BA/1023:1027, 1/BA/1034:1037 | No text annotation | ||
J3_4V6K_039 | 1/BA/1063:1068, 1/BA/1107:1113, 1/BA/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
J3_4V6K_024 | 1/BA/1073:1074, 1/BA/1083:1087, 1/BA/1098:1102 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
J3_4V6K_025 | 1/BA/1116:1118, 1/BA/1155:1158, 1/BA/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
J3_4V6K_040 | 1/BA/1116:1118, 1/BA/1155:1161, 1/BA/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
J3_4V6K_026 | 1/BA/1237:1241, 1/BA/1296:1303, 1/BA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
J4_4V6K_001 | 1/AB/268:269, 1/AB/370:375, 1/AB/399:406, 1/AB/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
J4_4V6K_002 | 1/AB/297:301, 1/AB/316:319, 1/AB/323:325, 1/AB/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
J4_4V6K_003 | 1/AB/601:604, 1/AB/624:628, 1/AB/635:638, 1/AB/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
J4_4V6K_016 | 1/AB/1262:1277, 1/AB/1293:1296, 1/AB/1644:1648, 1/AB/2009:2017 | No text annotation | ||
J4_4V6K_004 | 1/AB/1310:1314, 1/AB/1338:1343, 1/AB/1404:1405, 1/AB/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
J4_4V6K_005 | 1/AB/1313:1314, 1/AB/1338:1343, 1/AB/1404:1405, 1/AB/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
J4_4V6K_017 | 1/AB/1444:1445, 1/AB/1466:1467, 1/AB/1525:1526, 1/AB/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
J4_4V6K_006 | 1/AB/1444:1446, 1/AB/1465:1467, 1/AB/1525:1526, 1/AB/1546:1547 | No text annotation | ||
J4_4V6K_007 | 1/AB/1772:1776, 1/AB/1788:1792, 1/AB/1827:1830, 1/AB/1975:1979 | No text annotation | homologous J4_4WF9_007 J4_61477.5 | |
J4_4V6K_008 | 1/AB/1833:1835, 1/AB/1905:1906, 1/AB/1924:1933, 1/AB/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
J4_4V6K_009 | 1/AB/2285:2289, 1/AB/2343:2347, 1/AB/2370:2372, 1/AB/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
J4_4V6K_018 | 1/AB/2643:2646, 1/AB/2674:2676, 1/AB/2731:2735, 1/AB/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
J4_4V6K_011 | 1/BA/115:122, 1/BA/239:240, 1/BA/286:289, 1/BA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
J4_4V6K_012 | 1/BA/142:144, 1/BA/178:184, 1/BA/193:198, 1/BA/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
J4_4V6K_013 | 1/BA/575:577, 1/BA/764:769, 1/BA/810:821, 1/BA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
J4_4V6K_019 | 1/BB/7:10, 1/BB/25:27, 1/BB/43:49, 1/BB/65:66 | tRNA junction | homologous J4_5HR6_001 J4_70449.28 | |
J4_4V6K_015 | 1/BE/7:10, 1/BE/25:27, 1/BE/43:49, 1/BE/65:66 | tRNA junction | homologous J4_1QU2_001 J4_70449.28 | |
J5_4V6K_001 | 1/AB/47:54, 1/AB/116:121, 1/AB/130:131, 1/AB/148:150, 1/AB/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
J5_4V6K_008 | 1/AB/531:533, 1/AB/560:564, 1/AB/577:579, 1/AB/1261:1262, 1/AB/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
J5_4V6K_002 | 1/AB/584:589, 1/AB/668:671, 1/AB/809:812, 1/AB/1195:1196, 1/AB/1250:1256 | No text annotation | homologous J5_4WF9_004 J5_74302.5 | |
J5_4V6K_003 | 1/AB/1674:1682, 1/AB/1706:1707, 1/AB/1751:1752, 1/AB/1756:1764, 1/AB/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
J5_4V6K_004 | 1/AB/2057:2064, 1/AB/2446:2454, 1/AB/2498:2507, 1/AB/2582:2588, 1/AB/2606:2611 | No text annotation | ||
J5_4V6K_005 | 1/AB/2074:2077, 1/AB/2243:2246, 1/AB/2258:2259, 1/AB/2281:2282, 1/AB/2427:2435 | No text annotation | homologous J5_7A0S_007 J5_39529.1 | |
J5_4V6K_006 | 1/BA/36:39, 1/BA/403:406, 1/BA/436:442, 1/BA/492:500, 1/BA/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
J5_4V6K_007 | 1/BA/58:61, 1/BA/106:113, 1/BA/314:316, 1/BA/337:339, 1/BA/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
J6_4V6K_001 | 1/AB/45:46, 1/AB/179:183, 1/AB/214:224, 1/AB/231:235, 1/AB/262:266, 1/AB/426:433 | No text annotation | ||
J7_4V6K_001 | 1/AB/8:15, 1/AB/525:531, 1/AB/2018:2024, 1/AB/2039:2043, 1/AB/2625:2630, 1/AB/2788:2789, 1/AB/2894:2895 | No text annotation | ||
J7_4V6K_002 | 1/AB/531:533, 1/AB/560:564, 1/AB/577:579, 1/AB/1261:1277, 1/AB/1293:1296, 1/AB/1644:1648, 1/AB/2009:2018 | No text annotation | ||
J7_4V6K_003 | 1/AB/817:822, 1/AB/835:838, 1/AB/940:946, 1/AB/971:976, 1/AB/987:991, 1/AB/1163:1164, 1/AB/1185:1190 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_4V6K_006 | No text annotation | ||
J3_4V6K_009 | No text annotation | ||
J3_4V6K_020 | No text annotation | ||
J3_4V6K_023 | No text annotation | ||
J3_4V6K_038 | No text annotation | ||
J4_4V6K_010 | No text annotation | ||
J4_4V6K_014 | No text annotation |
Coloring options: