4V6K Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6K_110 | No text annotation | ||
| HL_4V6K_001 | No text annotation | ||
| HL_4V6K_002 | No text annotation | ||
| HL_4V6K_003 | No text annotation | ||
| HL_4V6K_004 | No text annotation | ||
| HL_4V6K_005 | No text annotation | ||
| HL_4V6K_006 | No text annotation | ||
| HL_4V6K_007 | No text annotation | ||
| HL_4V6K_008 | No text annotation | ||
| HL_4V6K_009 | No text annotation | ||
| HL_4V6K_010 | No text annotation | ||
| HL_4V6K_011 | T-loop with 2 stacked bulged bases | ||
| HL_4V6K_012 | No text annotation | ||
| HL_4V6K_013 | T-loop with unstacked turn | ||
| HL_4V6K_014 | No text annotation | ||
| HL_4V6K_015 | No text annotation | ||
| HL_4V6K_016 | GNRA | ||
| HL_4V6K_017 | GNRA | ||
| HL_4V6K_018 | No text annotation | ||
| HL_4V6K_117 | No text annotation | ||
| HL_4V6K_019 | No text annotation | ||
| HL_4V6K_020 | No text annotation | ||
| HL_4V6K_021 | GNRA | ||
| HL_4V6K_022 | No text annotation | ||
| HL_4V6K_023 | GNRA wlth tandem sheared | ||
| HL_4V6K_024 | No text annotation | ||
| HL_4V6K_025 | UNCG variation | ||
| HL_4V6K_026 | No text annotation | ||
| HL_4V6K_027 | GNRA | ||
| HL_4V6K_028 | No text annotation | ||
| HL_4V6K_111 | GNRA | ||
| HL_4V6K_029 | No text annotation | ||
| HL_4V6K_030 | No text annotation | ||
| HL_4V6K_031 | GNRA wlth tandem sheared | ||
| HL_4V6K_032 | No text annotation | ||
| HL_4V6K_033 | GNRA | ||
| HL_4V6K_034 | T-loop with 2 stacked bulged bases | ||
| HL_4V6K_035 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6K_036 | GNRA | ||
| HL_4V6K_037 | No text annotation | ||
| HL_4V6K_038 | No text annotation | ||
| HL_4V6K_039 | No text annotation | ||
| HL_4V6K_040 | UNCG | ||
| HL_4V6K_041 | Mini UNCG | ||
| HL_4V6K_042 | No text annotation | ||
| HL_4V6K_043 | GNRA with extra cWW | ||
| HL_4V6K_044 | UNCG | ||
| HL_4V6K_045 | Mini UNCG | ||
| HL_4V6K_046 | No text annotation | ||
| HL_4V6K_047 | No text annotation | ||
| HL_4V6K_048 | No text annotation | ||
| HL_4V6K_049 | No text annotation | ||
| HL_4V6K_050 | No text annotation | ||
| HL_4V6K_051 | No text annotation | ||
| HL_4V6K_112 | No text annotation | ||
| HL_4V6K_052 | No text annotation | ||
| HL_4V6K_053 | No text annotation | ||
| HL_4V6K_054 | No text annotation | ||
| HL_4V6K_113 | No text annotation | ||
| HL_4V6K_055 | No text annotation | ||
| HL_4V6K_056 | No text annotation | ||
| HL_4V6K_057 | No text annotation | ||
| HL_4V6K_118 | No text annotation | ||
| HL_4V6K_058 | Pseudoknot geometry | ||
| HL_4V6K_059 | GNRA | ||
| HL_4V6K_060 | GNRA | ||
| HL_4V6K_061 | No text annotation | ||
| HL_4V6K_062 | No text annotation | ||
| HL_4V6K_063 | GNRA variation | ||
| HL_4V6K_064 | No text annotation | ||
| HL_4V6K_065 | GNRA | ||
| HL_4V6K_066 | GNRA | ||
| HL_4V6K_067 | No text annotation | ||
| HL_4V6K_119 | Ribsomal LSU H95 | ||
| HL_4V6K_068 | No text annotation | ||
| HL_4V6K_069 | Mini UNCG | ||
| HL_4V6K_070 | No text annotation | ||
| HL_4V6K_071 | GNRA | ||
| HL_4V6K_072 | No text annotation | ||
| HL_4V6K_073 | No text annotation | ||
| HL_4V6K_074 | GNRA | ||
| HL_4V6K_075 | GNRA | ||
| HL_4V6K_076 | UNCG | ||
| HL_4V6K_077 | GNRA related | ||
| HL_4V6K_078 | GNRA | ||
| HL_4V6K_079 | No text annotation | ||
| HL_4V6K_080 | UNCG | ||
| HL_4V6K_081 | GNRA | ||
| HL_4V6K_082 | UNCG | ||
| HL_4V6K_083 | No text annotation | ||
| HL_4V6K_084 | No text annotation | ||
| HL_4V6K_114 | GNRA variation | ||
| HL_4V6K_085 | GNRA-like with tWH | ||
| HL_4V6K_086 | No text annotation | ||
| HL_4V6K_087 | GNRA | ||
| HL_4V6K_088 | No text annotation | ||
| HL_4V6K_089 | No text annotation | ||
| HL_4V6K_120 | No text annotation | ||
| HL_4V6K_090 | GNRA | ||
| HL_4V6K_091 | GNRA | ||
| HL_4V6K_092 | No text annotation | ||
| HL_4V6K_093 | GNRA | ||
| HL_4V6K_094 | UNCG | ||
| HL_4V6K_095 | GNRA | ||
| HL_4V6K_096 | T-loop related | ||
| HL_4V6K_097 | No text annotation | ||
| HL_4V6K_098 | GNRA | ||
| HL_4V6K_099 | GNRA | ||
| HL_4V6K_100 | T-loop with 3 stacked bulged bases | ||
| HL_4V6K_101 | No text annotation | ||
| HL_4V6K_102 | UNCG | ||
| HL_4V6K_103 | GNRA | ||
| HL_4V6K_104 | tRNA D-loop | ||
| HL_4V6K_105 | No text annotation | ||
| HL_4V6K_115 | tRNA anticodon loop | ||
| HL_4V6K_106 | T-loop with 2 stacked bulged bases | ||
| HL_4V6K_107 | tRNA D-loop | ||
| HL_4V6K_108 | No text annotation | ||
| HL_4V6K_116 | tRNA anticodon loop | ||
| HL_4V6K_109 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6K_001 | Major groove intercalation | ||
| IL_4V6K_002 | No text annotation | ||
| IL_4V6K_171 | No text annotation | ||
| IL_4V6K_003 | No text annotation | ||
| IL_4V6K_004 | Symmetric double minor groove platform | ||
| IL_4V6K_005 | Bacterial 5S Loop E | ||
| IL_4V6K_006 | Triple sheared with non-canonical cWW | ||
| IL_4V6K_007 | Single bulged A | ||
| IL_4V6K_172 | No text annotation | ||
| IL_4V6K_187 | Minor groove platform | ||
| IL_4V6K_008 | Isolated non-canonical cWW pair | ||
| IL_4V6K_009 | No text annotation | ||
| IL_4V6K_010 | Single stack bend | ||
| IL_4V6K_011 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6K_012 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V6K_013 | No text annotation | ||
| IL_4V6K_014 | No text annotation | ||
| IL_4V6K_015 | No text annotation | ||
| IL_4V6K_016 | No text annotation | ||
| IL_4V6K_017 | Double sheared | ||
| IL_4V6K_018 | AAA cross-strand stack | ||
| IL_4V6K_019 | No text annotation | ||
| IL_4V6K_020 | tHW-tHW cross-strand stack | ||
| IL_4V6K_021 | Single bulged A | ||
| IL_4V6K_022 | No text annotation | ||
| IL_4V6K_188 | Single bulged G | ||
| IL_4V6K_023 | Triple sheared | ||
| IL_4V6K_024 | Major groove platform | ||
| IL_4V6K_025 | Multiple bulged bases | ||
| IL_4V6K_026 | No text annotation | ||
| IL_4V6K_189 | No text annotation | ||
| IL_4V6K_027 | No text annotation | ||
| IL_4V6K_190 | Single stack bend | ||
| IL_4V6K_028 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6K_029 | No text annotation | ||
| IL_4V6K_030 | C-loop with bulged stacked A's | ||
| IL_4V6K_031 | Isolated cWS basepair | ||
| IL_4V6K_032 | No text annotation | ||
| IL_4V6K_033 | No text annotation | ||
| IL_4V6K_034 | Single bulged C | ||
| IL_4V6K_035 | UAA/GAN | ||
| IL_4V6K_036 | SSU/LSU pseudoknot | ||
| IL_4V6K_037 | Single bulged U | ||
| IL_4V6K_038 | No text annotation | ||
| IL_4V6K_039 | No text annotation | ||
| IL_4V6K_040 | Isolated non-canonical cWW pair | ||
| IL_4V6K_041 | Tandem non-canonical cWW pairs | ||
| IL_4V6K_042 | Kink-turn | ||
| IL_4V6K_043 | No text annotation | ||
| IL_4V6K_044 | No text annotation | ||
| IL_4V6K_045 | Isolated cWS basepair | ||
| IL_4V6K_046 | No text annotation | ||
| IL_4V6K_047 | Kink-turn | ||
| IL_4V6K_048 | Major groove platform; stack outside cWW | ||
| IL_4V6K_173 | C-loop | ||
| IL_4V6K_049 | No text annotation | ||
| IL_4V6K_050 | UAA/GAN | ||
| IL_4V6K_051 | tSH-tHW-tHS | ||
| IL_4V6K_052 | No text annotation | ||
| IL_4V6K_053 | UAA/GAN | ||
| IL_4V6K_054 | Tandem non-canonical cWW pairs | ||
| IL_4V6K_055 | tSH-tHW | ||
| IL_4V6K_056 | No text annotation | ||
| IL_4V6K_057 | tSH-tHW-tHS | ||
| IL_4V6K_058 | No text annotation | ||
| IL_4V6K_059 | Single bulged A | ||
| IL_4V6K_060 | UAA/GAN variation | ||
| IL_4V6K_061 | No text annotation | ||
| IL_4V6K_062 | Isolated tWW turn | ||
| IL_4V6K_174 | No text annotation | ||
| IL_4V6K_063 | Major groove platform; stack outside cWW | ||
| IL_4V6K_175 | No text annotation | ||
| IL_4V6K_064 | Intercalated tWH | ||
| IL_4V6K_065 | tSH-tSH-tHH-tHS | ||
| IL_4V6K_066 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V6K_067 | Triple sheared | ||
| IL_4V6K_068 | Single bulged C | ||
| IL_4V6K_069 | Single bulged A | ||
| IL_4V6K_070 | Kink-turn related | ||
| IL_4V6K_071 | No text annotation | ||
| IL_4V6K_072 | Major groove intercalation | ||
| IL_4V6K_073 | Minor groove platform | ||
| IL_4V6K_176 | No text annotation | ||
| IL_4V6K_074 | UAA/GAN related | ||
| IL_4V6K_075 | Bulged stacked bases | ||
| IL_4V6K_076 | No text annotation | ||
| IL_4V6K_077 | Major groove platform | ||
| IL_4V6K_078 | No text annotation | ||
| IL_4V6K_079 | No text annotation | ||
| IL_4V6K_177 | Single bulged U | ||
| IL_4V6K_080 | No text annotation | ||
| IL_4V6K_081 | Minor groove platform | ||
| IL_4V6K_082 | Isolated tHS basepair with bulges | ||
| IL_4V6K_083 | No text annotation | ||
| IL_4V6K_084 | Isolated non-canonical cWW pair | ||
| IL_4V6K_085 | Tandem non-canonical cWW pairs | ||
| IL_4V6K_191 | Isolated non-canonical cWW pair | ||
| IL_4V6K_086 | No text annotation | ||
| IL_4V6K_178 | No text annotation | ||
| IL_4V6K_087 | No text annotation | ||
| IL_4V6K_088 | Double sheared | ||
| IL_4V6K_089 | Major groove platform | ||
| IL_4V6K_179 | Major groove platform | ||
| IL_4V6K_090 | Decoding loop related | ||
| IL_4V6K_180 | Major groove platform | ||
| IL_4V6K_091 | Major groove minor groove platform with extra cWW | ||
| IL_4V6K_092 | Double sheared with non-canonical cWW | ||
| IL_4V6K_181 | Major groove platform | ||
| IL_4V6K_093 | No text annotation | ||
| IL_4V6K_094 | No text annotation | ||
| IL_4V6K_095 | Major groove platform with intercalation | ||
| IL_4V6K_096 | No text annotation | ||
| IL_4V6K_097 | Single bulged A | ||
| IL_4V6K_098 | tSH-tHS-tHW | ||
| IL_4V6K_099 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V6K_100 | C-loop | ||
| IL_4V6K_101 | UAA/GAN related, with intercalation | ||
| IL_4V6K_102 | Multiple bulged bases | ||
| IL_4V6K_103 | UAA/GAN with extra cWW | ||
| IL_4V6K_104 | No text annotation | ||
| IL_4V6K_105 | Major groove intercalation | ||
| IL_4V6K_106 | No text annotation | ||
| IL_4V6K_107 | No text annotation | ||
| IL_4V6K_108 | Single bulged G | ||
| IL_4V6K_109 | Single bulged A | ||
| IL_4V6K_110 | No text annotation | ||
| IL_4V6K_111 | Minor groove platform | ||
| IL_4V6K_112 | Multiple bulged bases | ||
| IL_4V6K_113 | Minor groove platform with extra cWW | ||
| IL_4V6K_114 | Minor groove platform | ||
| IL_4V6K_115 | Single bulged G | ||
| IL_4V6K_116 | Isolated non-canonical cWW pair | ||
| IL_4V6K_117 | Minor groove platform related | ||
| IL_4V6K_118 | Isolated cWH basepair | ||
| IL_4V6K_119 | tWH-tWH-tHW-tHW | ||
| IL_4V6K_192 | No text annotation | ||
| IL_4V6K_120 | No text annotation | ||
| IL_4V6K_121 | Kink-turn with non-sequential stacking | ||
| IL_4V6K_122 | No text annotation | ||
| IL_4V6K_123 | No text annotation | ||
| IL_4V6K_124 | Single bulged U | ||
| IL_4V6K_125 | No text annotation | ||
| IL_4V6K_126 | No text annotation | ||
| IL_4V6K_127 | No text annotation | ||
| IL_4V6K_128 | tSH-tHW-tWW | ||
| IL_4V6K_129 | No text annotation | ||
| IL_4V6K_130 | SSU/LSU pseudoknot | ||
| IL_4V6K_131 | Kink-turn related | ||
| IL_4V6K_132 | No text annotation | ||
| IL_4V6K_133 | tSH-tHW-tHS | ||
| IL_4V6K_134 | Major groove platform | ||
| IL_4V6K_135 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6K_193 | No text annotation | ||
| IL_4V6K_136 | No text annotation | ||
| IL_4V6K_137 | Major groove platform; stack outside cWW | ||
| IL_4V6K_138 | Minor groove platform | ||
| IL_4V6K_139 | Tandem non-canonical cWW pairs | ||
| IL_4V6K_182 | Triple non-canonical cWW pairs | ||
| IL_4V6K_140 | No text annotation | ||
| IL_4V6K_141 | Kink-turn | ||
| IL_4V6K_142 | Left turn | ||
| IL_4V6K_143 | tSH-tHW-tHS | ||
| IL_4V6K_144 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V6K_145 | Single bulged A | ||
| IL_4V6K_146 | Isolated non-canonical cWW pair | ||
| IL_4V6K_147 | Minor groove platform | ||
| IL_4V6K_148 | Isolated non-canonical cWW pair | ||
| IL_4V6K_149 | Minor groove platform | ||
| IL_4V6K_150 | Single stack bend | ||
| IL_4V6K_151 | Single bulged U | ||
| IL_4V6K_152 | No text annotation | ||
| IL_4V6K_183 | No text annotation | ||
| IL_4V6K_153 | Minor groove platform | ||
| IL_4V6K_154 | Single bulged A | ||
| IL_4V6K_184 | Tandem non-canonical cWW pairs | ||
| IL_4V6K_155 | Isolated non-canonical cWW pair | ||
| IL_4V6K_156 | No text annotation | ||
| IL_4V6K_157 | Minor groove platform | ||
| IL_4V6K_194 | No text annotation | ||
| IL_4V6K_158 | No text annotation | ||
| IL_4V6K_159 | No text annotation | ||
| IL_4V6K_160 | No text annotation | ||
| IL_4V6K_161 | Double sheared with non-canonical cWW | ||
| IL_4V6K_162 | No text annotation | ||
| IL_4V6K_163 | No text annotation | ||
| IL_4V6K_164 | No text annotation | ||
| IL_4V6K_185 | Isolated non-canonical cWW pair | ||
| IL_4V6K_165 | No text annotation | ||
| IL_4V6K_186 | No text annotation | ||
| IL_4V6K_195 | Isolated non-canonical cWW pair | ||
| IL_4V6K_166 | Tandem non-canonical cWW pairs | ||
| IL_4V6K_167 | No text annotation | ||
| IL_4V6K_168 | Triple sheared related | ||
| IL_4V6K_169 | Single bulged A | ||
| IL_4V6K_170 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6K_001 | No text annotation | ||
| J3_4V6K_002 | No text annotation | ||
| J3_4V6K_027 | No text annotation | ||
| J3_4V6K_028 | No text annotation | ||
| J3_4V6K_003 | No text annotation | ||
| J3_4V6K_004 | No text annotation | ||
| J3_4V6K_005 | No text annotation | ||
| J3_4V6K_006 | No text annotation | ||
| J3_4V6K_029 | No text annotation | ||
| J3_4V6K_007 | No text annotation | ||
| J3_4V6K_008 | No text annotation | ||
| J3_4V6K_030 | No text annotation | ||
| J3_4V6K_031 | No text annotation | ||
| J3_4V6K_009 | No text annotation | ||
| J3_4V6K_032 | Kink-turn 3-way junction | ||
| J3_4V6K_033 | No text annotation | ||
| J3_4V6K_010 | No text annotation | ||
| J3_4V6K_011 | No text annotation | ||
| J3_4V6K_012 | No text annotation | ||
| J3_4V6K_013 | No text annotation | ||
| J3_4V6K_014 | No text annotation | ||
| J3_4V6K_034 | No text annotation | ||
| J3_4V6K_015 | No text annotation | ||
| J3_4V6K_035 | No text annotation | ||
| J3_4V6K_016 | No text annotation | ||
| J3_4V6K_017 | No text annotation | ||
| J3_4V6K_018 | No text annotation | ||
| J3_4V6K_019 | No text annotation | ||
| J3_4V6K_020 | No text annotation | ||
| J3_4V6K_036 | No text annotation | ||
| J3_4V6K_021 | No text annotation | ||
| J3_4V6K_037 | No text annotation | ||
| J3_4V6K_022 | No text annotation | ||
| J3_4V6K_039 | No text annotation | ||
| J3_4V6K_023 | No text annotation | ||
| J3_4V6K_024 | No text annotation | ||
| J3_4V6K_025 | No text annotation | ||
| J3_4V6K_040 | No text annotation | ||
| J3_4V6K_038 | No text annotation | ||
| J3_4V6K_026 | No text annotation | ||
| J4_4V6K_001 | No text annotation | ||
| J4_4V6K_002 | No text annotation | ||
| J4_4V6K_003 | No text annotation | ||
| J4_4V6K_016 | No text annotation | ||
| J4_4V6K_004 | No text annotation | ||
| J4_4V6K_005 | No text annotation | ||
| J4_4V6K_017 | No text annotation | ||
| J4_4V6K_006 | No text annotation | ||
| J4_4V6K_007 | No text annotation | ||
| J4_4V6K_008 | No text annotation | ||
| J4_4V6K_009 | No text annotation | ||
| J4_4V6K_018 | No text annotation | ||
| J4_4V6K_010 | No text annotation | ||
| J4_4V6K_011 | No text annotation | ||
| J4_4V6K_012 | No text annotation | ||
| J4_4V6K_013 | No text annotation | ||
| J4_4V6K_019 | tRNA junction | ||
| J4_4V6K_014 | No text annotation | ||
| J4_4V6K_015 | tRNA junction | ||
| J5_4V6K_001 | No text annotation | ||
| J5_4V6K_008 | No text annotation | ||
| J5_4V6K_002 | No text annotation | ||
| J5_4V6K_003 | No text annotation | ||
| J5_4V6K_004 | No text annotation | ||
| J5_4V6K_005 | No text annotation | ||
| J5_4V6K_006 | No text annotation | ||
| J5_4V6K_007 | No text annotation | ||
| J6_4V6K_001 | No text annotation | ||
| J7_4V6K_001 | No text annotation | ||
| J7_4V6K_002 | No text annotation | ||
| J7_4V6K_003 | No text annotation |
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