HL_4V6K_012

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_012 not in the Motif Atlas

Homologous match to HL_7A0S_011

Geometric discrepancy: 0.191

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V6K|1|AB|G|319
4V6K|1|AB|A|320
4V6K|1|AB|U|321
4V6K|1|AB|A|322
4V6K|1|AB|C|323

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AV

50S ribosomal protein L24