HL_4V6K_025

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

4V6K|1|AB|A|781, 4V6K|1|AB|G|784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_025 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2578

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V6K|1|AB|U|779
4V6K|1|AB|G|780
4V6K|1|AB|A|781
4V6K|1|AB|A|782
4V6K|1|AB|A|783
4V6K|1|AB|G|784
4V6K|1|AB|G|785

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AD

50S ribosomal protein L2