HL_4V6K_026

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4V6K|1|AB|U|827, 4V6K|1|AB|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_026 not in the Motif Atlas

Homologous match to HL_7A0S_024

Geometric discrepancy: 0.1458

The information below is about HL_7A0S_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4V6K|1|AB|U|826
4V6K|1|AB|U|827
4V6K|1|AB|U|828
4V6K|1|AB|A|829
4V6K|1|AB|G|830
4V6K|1|AB|G|831

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AM

50S ribosomal protein L15