HL_4V6K_042

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

4V6K|1|AB|A|1616

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_042 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.3207

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V6K|1|AB|C|1612
4V6K|1|AB|G|1613
4V6K|1|AB|A|1614
4V6K|1|AB|C|1615
4V6K|1|AB|A|1616
4V6K|1|AB|C|1617
4V6K|1|AB|6MZ|1618
4V6K|1|AB|G|1619

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AT

50S ribosomal protein L22

Chain Ae

50S ribosomal protein L34