HL_4V6K_052

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

4V6K|1|AB|A|2031, 4V6K|1|AB|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_052 not in the Motif Atlas

Geometric match to HL_4WF9_047

Geometric discrepancy: 0.3056

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6K|1|AB|G|2027
4V6K|1|AB|U|2028
4V6K|1|AB|G|2029
4V6K|1|AB|6MZ|2030
4V6K|1|AB|A|2031
4V6K|1|AB|G|2032
4V6K|1|AB|A|2033
4V6K|1|AB|U|2034
4V6K|1|AB|G|2035
4V6K|1|AB|C|2036

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AS

50S ribosomal protein L21