HL_4V6K_057

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_057 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2831

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V6K|1|AB|G|2303
4V6K|1|AB|G|2304
4V6K|1|AB|U|2305
4V6K|1|AB|C|2306
4V6K|1|AB|G|2307
4V6K|1|AB|G|2308
4V6K|1|AB|A|2309
4V6K|1|AB|C|2310
4V6K|1|AB|A|2311
4V6K|1|AB|U|2312
4V6K|1|AB|C|2313

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AG

50S ribosomal protein L5