HL_4V6K_058

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_058 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.2757

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

4V6K|1|AB|U|2324
4V6K|1|AB|G|2325
4V6K|1|AB|C|2326
4V6K|1|AB|A|2327
4V6K|1|AB|A|2328
4V6K|1|AB|U|2329
4V6K|1|AB|G|2330
4V6K|1|AB|G|2331

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AX

50S ribosomal protein L27