HL_4V6K_067

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

AUGCCAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_067 not in the Motif Atlas

Geometric match to HL_3R4F_002

Geometric discrepancy: 0.2962

The information below is about HL_3R4F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38592.1

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

4V6K|1|AB|A|2700
4V6K|1|AB|U|2701
4V6K|1|AB|G|2702
4V6K|1|AB|C|2703
4V6K|1|AB|C|2704
4V6K|1|AB|A|2705
4V6K|1|AB|A|2706
4V6K|1|AB|U|2707

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AO

50S ribosomal protein L17