HL_4V6K_079

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_079 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.4032

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V6K|1|BA|A|320
4V6K|1|BA|A|321
4V6K|1|BA|C|322
4V6K|1|BA|U|323
4V6K|1|BA|G|324
4V6K|1|BA|A|325
4V6K|1|BA|G|326
4V6K|1|BA|A|327
4V6K|1|BA|C|328
4V6K|1|BA|A|329
4V6K|1|BA|C|330
4V6K|1|BA|G|331
4V6K|1|BA|G|332
4V6K|1|BA|U|333

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BX

30S ribosomal protein S20