HL_4V6K_090

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_090 not in the Motif Atlas

Homologous match to HL_6CZR_090

Geometric discrepancy: 0.3809

The information below is about HL_6CZR_090

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V6K|1|BA|C|862
4V6K|1|BA|U|863
4V6K|1|BA|A|864
4V6K|1|BA|A|865
4V6K|1|BA|C|866
4V6K|1|BA|G|867

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S5