HL_4V6K_091

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

4V6K|1|BA|C|899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_091 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.5778

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6K|1|BA|C|897
4V6K|1|BA|G|898
4V6K|1|BA|C|899
4V6K|1|BA|A|900
4V6K|1|BA|A|901
4V6K|1|BA|G|902

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA