HL_4V6K_107

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CAG(H2U)CGG(H2U)AG

Length

10 nucleotides

Bulged bases

4V6K|1|BE|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_107 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.2246

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V6K|1|BE|C|13
4V6K|1|BE|A|14
4V6K|1|BE|G|15
4V6K|1|BE|H2U|16
4V6K|1|BE|C|17
4V6K|1|BE|G|18
4V6K|1|BE|G|19
4V6K|1|BE|H2U|20
4V6K|1|BE|A|21
4V6K|1|BE|G|22

Current chains

Chain BE

A/T-site tRNA Phe

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain AG

50S ribosomal protein L5