HL_4V6K_109
3D structure
- PDB id
- 4V6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.25 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6K_109 not in the Motif Atlas
- Homologous match to HL_5IBB_211
- Geometric discrepancy: 0.4089
- The information below is about HL_5IBB_211
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4V6K|1|BE|G|53
4V6K|1|BE|5MU|54
4V6K|1|BE|PSU|55
4V6K|1|BE|C|56
4V6K|1|BE|G|57
4V6K|1|BE|A|58
4V6K|1|BE|U|59
4V6K|1|BE|U|60
4V6K|1|BE|C|61
Current chains
- Chain BE
- A/T-site tRNA Phe
Nearby chains
- Chain AG
- 50S ribosomal protein L5
- Chain AX
- 50S ribosomal protein L27
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