HL_4V6L_002

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GCUUGC

Length

6 nucleotides

Bulged bases

4V6L|1|AA|U|84, 4V6L|1|AA|G|86

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_002 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.2757

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V6L|1|AA|G|82
4V6L|1|AA|C|83
4V6L|1|AA|U|84
4V6L|1|AA|U|85
4V6L|1|AA|G|86
4V6L|1|AA|C|87

Current chains

Chain AA

16S ribosomal RNA

Nearby chains