4V6L Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_4V6L_001 | 1/AA/12:22 | No text annotation | geometric HL_5J7L_001 HL_89881.5 | |
HL_4V6L_002 | 1/AA/82:87 | Mini UNCG | geometric HL_4L8H_001 HL_48778.2 | |
HL_4V6L_003 | 1/AA/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.8 | |
HL_4V6L_004 | 1/AA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
HL_4V6L_005 | 1/AA/207:212 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
HL_4V6L_006 | 1/AA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
HL_4V6L_007 | 1/AA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
HL_4V6L_008 | 1/AA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
HL_4V6L_009 | 1/AA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
HL_4V6L_010 | 1/AA/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
HL_4V6L_011 | 1/AA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
HL_4V6L_012 | 1/AA/462:470 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
HL_4V6L_111 | 1/AA/522:527 | GNRA variation | homologous HL_5J7L_205 HL_37824.8 | |
HL_4V6L_014 | 1/AA/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
HL_4V6L_015 | 1/AA/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
HL_4V6L_016 | 1/AA/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
HL_4V6L_115 | 1/AA/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
HL_4V6L_116 | 1/AA/840:846 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
HL_4V6L_019 | 1/AA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
HL_4V6L_020 | 1/AA/897:902 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
HL_4V6L_117 | 1/AA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
HL_4V6L_022 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
HL_4V6L_023 | 1/AA/1028:1033 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
HL_4V6L_024 | 1/AA/1076:1081 | GNRA | homologous HL_6CZR_095 NA | |
HL_4V6L_025 | 1/AA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
HL_4V6L_026 | 1/AA/1134:1140 | No text annotation | homologous HL_5J7L_025 HL_87954.2 | |
HL_4V6L_027 | 1/AA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
HL_4V6L_028 | 1/AA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
HL_4V6L_029 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
HL_4V6L_030 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
HL_4V6L_031 | 1/AA/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
HL_4V6L_032 | 1/AA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
HL_4V6L_033 | 1/AB/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
HL_4V6L_112 | 1/AB/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
HL_4V6L_035 | 1/AB/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5E81_207 HL_28252.9 | |
HL_4V6L_036 | 1/AE/13:22 | No text annotation | homologous HL_4YYE_001 NA | |
HL_4V6L_037 | 1/AE/30:40 | No text annotation | homologous HL_1B23_002 NA | |
HL_4V6L_038 | 1/AE/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5IBB_211 HL_28252.9 | |
HL_4V6L_113 | 1/BA/34:48 | No text annotation | homologous HL_8C3A_228 NA | |
HL_4V6L_039 | 1/BA/38:44 | No text annotation | geometric HL_5TBW_006 NA | |
HL_4V6L_040 | 1/BA/85:91 | No text annotation | geometric HL_5UD5_001 HL_48417.6 | |
HL_4V6L_041 | 1/BB/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
HL_4V6L_042 | 1/BB/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
HL_4V6L_043 | 1/BB/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
HL_4V6L_044 | 1/BB/137:142 | No text annotation | ||
HL_4V6L_045 | 1/BB/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
HL_4V6L_046 | 1/BB/194:201 | No text annotation | geometric HL_4V9F_006 HL_30068.2 | |
HL_4V6L_047 | 1/BB/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
HL_4V6L_048 | 1/BB/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
HL_4V6L_049 | 1/BB/305:312 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_01609.3 | |
HL_4V6L_050 | 1/BB/319:323 | No text annotation | homologous HL_4WF9_011 HL_75660.5 | |
HL_4V6L_051 | 1/BB/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
HL_4V6L_052 | 1/BB/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
HL_4V6L_053 | 1/BB/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
HL_4V6L_054 | 1/BB/462:467 | GNRA | homologous HL_7RQB_015 NA | |
HL_4V6L_055 | 1/BB/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.8 | |
HL_4V6L_118 | 1/BB/541:552 | No text annotation | ||
HL_4V6L_119 | 1/BB/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.9 | |
HL_4V6L_058 | 1/BB/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
HL_4V6L_059 | 1/BB/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
HL_4V6L_060 | 1/BB/641:647 | No text annotation | ||
HL_4V6L_061 | 1/BB/712:719 | No text annotation | homologous HL_9DFE_020 HL_81538.2 | |
HL_4V6L_062 | 1/BB/744:753 | No text annotation | homologous HL_5J7L_155 HL_88205.2 | |
HL_4V6L_063 | 1/BB/779:785 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
HL_4V6L_064 | 1/BB/826:831 | No text annotation | homologous HL_7A0S_024 HL_55195.3 | |
HL_4V6L_065 | 1/BB/885:891 | No text annotation | geometric HL_3IGI_004 HL_04783.2 | |
HL_4V6L_114 | 1/BB/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.8 | |
HL_4V6L_067 | 1/BB/977:986 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
HL_4V6L_068 | 1/BB/1064:1074 | No text annotation | geometric HL_4WF9_011 HL_75660.5 | |
HL_4V6L_069 | 1/BB/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
HL_4V6L_070 | 1/BB/1172:1177 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
HL_4V6L_071 | 1/BB/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
HL_4V6L_072 | 1/BB/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.9 | |
HL_4V6L_073 | 1/BB/1324:1330 | Pseudoknot geometry with 3' bulge | geometric HL_7A0S_033 HL_57176.2 | |
HL_4V6L_074 | 1/BB/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
HL_4V6L_075 | 1/BB/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
HL_4V6L_076 | 1/BB/1450:1461 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
HL_4V6L_077 | 1/BB/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
HL_4V6L_078 | 1/BB/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
HL_4V6L_079 | 1/BB/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
HL_4V6L_080 | 1/BB/1612:1619 | No text annotation | homologous HL_5J7L_173 HL_89567.2 | |
HL_4V6L_081 | 1/BB/1629:1637 | GNRA with extra cWW | homologous HL_4WF9_039 HL_20167.2 | |
HL_4V6L_082 | 1/BB/1691:1696 | UNCG | geometric HL_4LFB_011 HL_34617.5 | |
HL_4V6L_083 | 1/BB/1728:1731 | Mini UNCG | geometric HL_5VW1_002 HL_48778.2 | |
HL_4V6L_084 | 1/BB/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
HL_4V6L_085 | 1/BB/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
HL_4V6L_086 | 1/BB/1806:1811 | No text annotation | homologous HL_4WF9_044 NA | |
HL_4V6L_087 | 1/BB/1868:1873 | No text annotation | homologous HL_4WF9_045 NA | |
HL_4V6L_088 | 1/BB/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
HL_4V6L_089 | 1/BB/1949:1957 | No text annotation | homologous HL_7A0S_048 HL_20167.2 | |
HL_4V6L_090 | 1/BB/2027:2036 | No text annotation | homologous HL_7A0S_049 HL_61996.3 | |
HL_4V6L_091 | 1/BB/2143:2148 | No text annotation | geometric HL_4V88_198 NA | |
HL_4V6L_092 | 1/BB/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
HL_4V6L_120 | 1/BB/2247:2257 | No text annotation | ||
HL_4V6L_094 | 1/BB/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
HL_4V6L_121 | 1/BB/2304:2312 | No text annotation | ||
HL_4V6L_096 | 1/BB/2324:2331 | Pseudoknot geometry | homologous HL_4WF9_052 HL_93324.4 | |
HL_4V6L_097 | 1/BB/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.8 | |
HL_4V6L_098 | 1/BB/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
HL_4V6L_099 | 1/BB/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
HL_4V6L_100 | 1/BB/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_32735.2 | |
HL_4V6L_101 | 1/BB/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
HL_4V6L_102 | 1/BB/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
HL_4V6L_103 | 1/BB/2594:2599 | GNRA | homologous HL_5J7L_196 HL_37824.8 | |
HL_4V6L_104 | 1/BB/2658:2663 | GNRA | homologous HL_4WF9_060 HL_37824.8 | |
HL_4V6L_105 | 1/BB/2701:2706 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_65794.5 | |
HL_4V6L_106 | 1/BB/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
HL_4V6L_107 | 1/BB/2796:2800 | Mini UNCG | geometric HL_4V88_192 NA | |
HL_4V6L_108 | 1/BB/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
HL_4V6L_109 | 1/BB/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.8 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4V6L_110 | No text annotation | ||
HL_4V6L_013 | No text annotation | ||
HL_4V6L_017 | No text annotation | ||
HL_4V6L_018 | No text annotation | ||
HL_4V6L_021 | tRNA D-loop | ||
HL_4V6L_034 | No text annotation | ||
HL_4V6L_056 | No text annotation | ||
HL_4V6L_057 | No text annotation | ||
HL_4V6L_066 | No text annotation | ||
HL_4V6L_093 | No text annotation | ||
HL_4V6L_095 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_4V6L_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
IL_4V6L_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
IL_4V6L_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
IL_4V6L_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
IL_4V6L_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
IL_4V6L_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
IL_4V6L_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
IL_4V6L_008 | 1/AA/75:76, 1/AA/93:95 | Single bulged G | geometric IL_5DEA_002 IL_00225.14 | |
IL_4V6L_009 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
IL_4V6L_010 | 1/AA/132:136, 1/AA/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
IL_4V6L_011 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
IL_4V6L_192 | 1/AA/202:206, 1/AA/213:215 | No text annotation | homologous IL_5J7L_013 IL_66997.2 | |
IL_4V6L_013 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
IL_4V6L_193 | 1/AA/249:252, 1/AA/274:275 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
IL_4V6L_015 | 1/AA/292:294, 1/AA/303:308 | No text annotation | ||
IL_4V6L_016 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
IL_4V6L_017 | 1/AA/371:376, 1/AA/387:390 | No text annotation | ||
IL_4V6L_018 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
IL_4V6L_019 | 1/AA/440:442, 1/AA/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
IL_4V6L_020 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
IL_4V6L_021 | 1/AA/450:455, 1/AA/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
IL_4V6L_022 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
IL_4V6L_023 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
IL_4V6L_024 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
IL_4V6L_025 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
IL_4V6L_026 | 1/AA/594:597, 1/AA/643:645 | No text annotation | geometric IL_8C3A_429 NA | |
IL_4V6L_027 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
IL_4V6L_194 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
IL_4V6L_029 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
IL_4V6L_195 | 1/AA/659:660, 1/AA/745:747 | No text annotation | geometric IL_8CRE_394 IL_51454.3 | |
IL_4V6L_031 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
IL_4V6L_196 | 1/AA/673:677, 1/AA/713:717 | Triple non-canonical cWW pairs | geometric IL_5J7L_361 IL_49751.4 | |
IL_4V6L_032 | 1/AA/684:688, 1/AA/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
IL_4V6L_033 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
IL_4V6L_034 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
IL_4V6L_035 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
IL_4V6L_036 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
IL_4V6L_037 | 1/AA/925:928, 1/AA/1389:1391 | Isolated non-canonical cWW pair | geometric IL_5H1K_001 NA | |
IL_4V6L_197 | 1/AA/933:935, 1/AA/1380:1384 | No text annotation | ||
IL_4V6L_171 | 1/AA/952:954, 1/AA/1226:1229 | Isolated non-canonical cWW pair | geometric IL_5B2P_002 IL_07785.1 | |
IL_4V6L_040 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
IL_4V6L_041 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | homologous IL_5J7L_043 IL_47078.3 | |
IL_4V6L_042 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
IL_4V6L_043 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | geometric IL_5J7L_046 IL_89505.4 | |
IL_4V6L_045 | 1/AA/1052:1056, 1/AA/1204:1206 | No text annotation | homologous IL_6CZR_154 NA | |
IL_4V6L_046 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
IL_4V6L_047 | 1/AA/1060:1063, 1/AA/1193:1197 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_85033.2 | |
IL_4V6L_048 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
IL_4V6L_049 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
IL_4V6L_198 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation | geometric IL_4LFB_050 IL_42032.1 | |
IL_4V6L_051 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
IL_4V6L_052 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation | ||
IL_4V6L_053 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
IL_4V6L_054 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation | geometric IL_4V88_462 NA | |
IL_4V6L_055 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
IL_4V6L_056 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
IL_4V6L_172 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
IL_4V6L_173 | 1/AA/1407:1409, 1/AA/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
IL_4V6L_058 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_87907.2 | |
IL_4V6L_059 | 1/AA/1416:1420, 1/AA/1480:1484 | No text annotation | ||
IL_4V6L_060 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
IL_4V6L_061 | 1/AA/1440:1442, 1/AA/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.7 | |
IL_4V6L_062 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
IL_4V6L_175 | 1/BA/17:18, 1/BA/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.7 | |
IL_4V6L_064 | 1/BA/23:28, 1/BA/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
IL_4V6L_199 | 1/BA/30:31, 1/BA/51:54 | No text annotation | ||
IL_4V6L_066 | 1/BA/34:38, 1/BA/44:48 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.11 | |
IL_4V6L_067 | 1/BA/71:79, 1/BA/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
IL_4V6L_068 | 1/BB/24:30, 1/BB/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
IL_4V6L_069 | 1/BB/36:37, 1/BB/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
IL_4V6L_200 | 1/BB/43:44, 1/BB/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
IL_4V6L_071 | 1/BB/82:85, 1/BB/97:104 | No text annotation | ||
IL_4V6L_072 | 1/BB/183:184, 1/BB/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
IL_4V6L_073 | 1/BB/188:194, 1/BB/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
IL_4V6L_074 | 1/BB/239:245, 1/BB/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
IL_4V6L_075 | 1/BB/269:271, 1/BB/366:370 | No text annotation | ||
IL_4V6L_076 | 1/BB/274:281, 1/BB/359:363 | No text annotation | ||
IL_4V6L_077 | 1/BB/293:295, 1/BB/343:347 | No text annotation | ||
IL_4V6L_078 | 1/BB/481:484, 1/BB/496:509 | No text annotation | geometric IL_7RQB_014 NA | |
IL_4V6L_079 | 1/BB/536:539, 1/BB/554:557 | Double sheared | homologous IL_4WF9_016 IL_09705.15 | |
IL_4V6L_201 | 1/BB/564:566, 1/BB/575:577 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 IL_07785.1 | |
IL_4V6L_080 | 1/BB/606:610, 1/BB/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
IL_4V6L_081 | 1/BB/672:674, 1/BB/806:808 | Isolated non-canonical cWW pair | geometric IL_5TBW_046 NA | |
IL_4V6L_082 | 1/BB/674:678, 1/BB/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
IL_4V6L_083 | 1/BB/697:698, 1/BB/763:765 | Single bulged A | geometric IL_4V9F_025 IL_31462.7 | |
IL_4V6L_084 | 1/BB/702:707, 1/BB/724:730 | No text annotation | ||
IL_4V6L_085 | 1/BB/738:740, 1/BB/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
IL_4V6L_086 | 1/BB/775:777, 1/BB/787:791 | Multiple bulged bases | geometric IL_7A0S_021 IL_06549.2 | |
IL_4V6L_202 | 1/BB/843:848, 1/BB/930:935 | No text annotation | ||
IL_4V6L_203 | 1/BB/850:851, 1/BB/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
IL_4V6L_089 | 1/BB/856:862, 1/BB/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
IL_4V6L_090 | 1/BB/862:863, 1/BB/913:915 | Single bulged G | geometric IL_4C7O_004 IL_00225.14 | |
IL_4V6L_091 | 1/BB/864:868, 1/BB/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
IL_4V6L_178 | 1/BB/870:872, 1/BB/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
IL_4V6L_093 | 1/BB/875:879, 1/BB/898:902 | No text annotation | ||
IL_4V6L_094 | 1/BB/880:881, 1/BB/895:897 | No text annotation | ||
IL_4V6L_095 | 1/BB/994:996, 1/BB/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
IL_4V6L_096 | 1/BB/998:1002, 1/BB/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
IL_4V6L_097 | 1/BB/1004:1011, 1/BB/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
IL_4V6L_098 | 1/BB/1011:1013, 1/BB/1149:1150 | Single bulged U | homologous IL_7A0S_035 IL_89505.4 | |
IL_4V6L_099 | 1/BB/1017:1024, 1/BB/1140:1145 | No text annotation | ||
IL_4V6L_100 | 1/BB/1024:1030, 1/BB/1124:1140 | No text annotation | ||
IL_4V6L_101 | 1/BB/1031:1034, 1/BB/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
IL_4V6L_102 | 1/BB/1038:1041, 1/BB/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
IL_4V6L_103 | 1/BB/1043:1051, 1/BB/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
IL_4V6L_104 | 1/BB/1059:1062, 1/BB/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
IL_4V6L_105 | 1/BB/1087:1090, 1/BB/1101:1102 | Major groove platform | geometric IL_3NKB_002 IL_48076.6 | |
IL_4V6L_106 | 1/BB/1196:1198, 1/BB/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.3 | |
IL_4V6L_107 | 1/BB/1202:1206, 1/BB/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
IL_4V6L_108 | 1/BB/1208:1215, 1/BB/1234:1238 | Kink-turn | homologous IL_7A0S_043 IL_70923.9 | |
IL_4V6L_109 | 1/BB/1262:1270, 1/BB/2010:2017 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
IL_4V6L_110 | 1/BB/1310:1313, 1/BB/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
IL_4V6L_180 | 1/BB/1319:1323, 1/BB/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
IL_4V6L_112 | 1/BB/1351:1355, 1/BB/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
IL_4V6L_113 | 1/BB/1357:1361, 1/BB/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
IL_4V6L_114 | 1/BB/1415:1416, 1/BB/1582:1587 | No text annotation | ||
IL_4V6L_115 | 1/BB/1417:1421, 1/BB/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
IL_4V6L_181 | 1/BB/1424:1429, 1/BB/1564:1574 | No text annotation | ||
IL_4V6L_116 | 1/BB/1432:1435, 1/BB/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
IL_4V6L_182 | 1/BB/1437:1440, 1/BB/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
IL_4V6L_118 | 1/BB/1468:1471, 1/BB/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
IL_4V6L_119 | 1/BB/1474:1478, 1/BB/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
IL_4V6L_120 | 1/BB/1480:1483, 1/BB/1506:1511 | No text annotation | ||
IL_4V6L_121 | 1/BB/1489:1491, 1/BB/1499:1500 | No text annotation | ||
IL_4V6L_122 | 1/BB/1526:1529, 1/BB/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
IL_4V6L_123 | 1/BB/1651:1656, 1/BB/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
IL_4V6L_124 | 1/BB/1663:1665, 1/BB/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
IL_4V6L_125 | 1/BB/1666:1669, 1/BB/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
IL_4V6L_183 | 1/BB/1666:1674, 1/BB/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
IL_4V6L_126 | 1/BB/1669:1674, 1/BB/1990:1993 | Intercalated tWH | geometric IL_4WF9_065 IL_76758.2 | |
IL_4V6L_127 | 1/BB/1686:1691, 1/BB/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_47346.2 | |
IL_4V6L_128 | 1/BB/1712:1718, 1/BB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
IL_4V6L_129 | 1/BB/1720:1724, 1/BB/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
IL_4V6L_130 | 1/BB/1727:1728, 1/BB/1731:1733 | Single bulged C | homologous IL_5J7L_311 IL_61258.15 | |
IL_4V6L_131 | 1/BB/1770:1771, 1/BB/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.7 | |
IL_4V6L_132 | 1/BB/1798:1804, 1/BB/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
IL_4V6L_133 | 1/BB/1837:1840, 1/BB/1902:1903 | No text annotation | homologous IL_4WF9_070 NA | |
IL_4V6L_134 | 1/BB/1841:1842, 1/BB/1898:1901 | Major groove intercalation | homologous IL_4WF9_071 IL_82107.5 | |
IL_4V6L_135 | 1/BB/1846:1849, 1/BB/1893:1894 | Major groove minor groove platform; mini C-loop | geometric IL_4PDB_002 IL_68140.4 | |
IL_4V6L_184 | 1/BB/1851:1860, 1/BB/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
IL_4V6L_136 | 1/BB/1864:1867, 1/BB/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
IL_4V6L_137 | 1/BB/1933:1934, 1/BB/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 IL_22551.4 | |
IL_4V6L_138 | 1/BB/1934:1945, 1/BB/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
IL_4V6L_139 | 1/BB/2050:2052, 1/BB/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
IL_4V6L_185 | 1/BB/2054:2056, 1/BB/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
IL_4V6L_186 | 1/BB/2067:2069, 1/BB/2442:2443 | Single bulged U | homologous IL_9DFE_080 IL_89505.4 | |
IL_4V6L_143 | 1/BB/2070:2071, 1/BB/2438:2441 | Minor groove platform | geometric IL_4WF9_081 IL_51454.3 | |
IL_4V6L_144 | 1/BB/2081:2083, 1/BB/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_85599.2 | |
IL_4V6L_145 | 1/BB/2085:2087, 1/BB/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
IL_4V6L_204 | 1/BB/2103:2105, 1/BB/2184:2186 | Isolated non-canonical cWW pair | geometric IL_8P9A_350 IL_28037.2 | |
IL_4V6L_205 | 1/BB/2108:2110, 1/BB/2179:2181 | Isolated non-canonical cWW pair | homologous IL_3U4M_001 IL_28037.2 | |
IL_4V6L_148 | 1/BB/2110:2120, 1/BB/2178:2179 | No text annotation | ||
IL_4V6L_187 | 1/BB/2124:2137, 1/BB/2154:2174 | No text annotation | ||
IL_4V6L_188 | 1/BB/2202:2204, 1/BB/2220:2221 | Single bulged U | geometric IL_7PMQ_002 IL_89505.4 | |
IL_4V6L_150 | 1/BB/2350:2353, 1/BB/2364:2367 | Double sheared | homologous IL_4WF9_087 IL_09705.15 | |
IL_4V6L_151 | 1/BB/2401:2403, 1/BB/2414:2415 | Major groove platform | homologous IL_7A0S_082 IL_48076.6 | |
IL_4V6L_189 | 1/BB/2453:2454, 1/BB/2498:2500 | Single stack bend | homologous IL_5J7L_391 IL_26793.1 | |
IL_4V6L_190 | 1/BB/2454:2455, 1/BB/2496:2498 | Major groove platform | homologous IL_9DFE_092 IL_48076.6 | |
IL_4V6L_191 | 1/BB/2457:2459, 1/BB/2493:2494 | Major groove platform | homologous IL_5J7L_393 IL_07039.3 | |
IL_4V6L_154 | 1/BB/2459:2461, 1/BB/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_51387.3 | |
IL_4V6L_155 | 1/BB/2466:2470, 1/BB/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
IL_4V6L_206 | 1/BB/2507:2508, 1/BB/2580:2582 | Major groove platform | homologous IL_5J7L_394 IL_07039.3 | |
IL_4V6L_157 | 1/BB/2510:2513, 1/BB/2571:2578 | No text annotation | ||
IL_4V6L_158 | 1/BB/2522:2523, 1/BB/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
IL_4V6L_160 | 1/BB/2591:2592, 1/BB/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.7 | |
IL_4V6L_161 | 1/BB/2636:2640, 1/BB/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
IL_4V6L_162 | 1/BB/2652:2658, 1/BB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
IL_4V6L_163 | 1/BB/2680:2684, 1/BB/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
IL_4V6L_164 | 1/BB/2687:2691, 1/BB/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
IL_4V6L_165 | 1/BB/2695:2696, 1/BB/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
IL_4V6L_166 | 1/BB/2737:2742, 1/BB/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
IL_4V6L_167 | 1/BB/2806:2811, 1/BB/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
IL_4V6L_168 | 1/BB/2838:2839, 1/BB/2878:2880 | Major groove intercalation | homologous IL_4WF9_106 IL_66635.5 | |
IL_4V6L_169 | 1/BB/2843:2846, 1/BB/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
IL_4V6L_170 | 1/BB/2847:2852, 1/BB/2865:2869 | No text annotation | homologous IL_7A0S_101 IL_70411.2 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4V6L_012 | No text annotation | ||
IL_4V6L_014 | No text annotation | ||
IL_4V6L_028 | No text annotation | ||
IL_4V6L_030 | No text annotation | ||
IL_4V6L_038 | No text annotation | ||
IL_4V6L_039 | Isolated cWS basepair | ||
IL_4V6L_044 | Isolated non-canonical cWW pair | ||
IL_4V6L_050 | No text annotation | ||
IL_4V6L_057 | No text annotation | ||
IL_4V6L_174 | Tandem non-canonical cWW pairs | ||
IL_4V6L_063 | Single bulged G, near cWW | ||
IL_4V6L_065 | No text annotation | ||
IL_4V6L_176 | Tandem non-canonical cWW pairs | ||
IL_4V6L_070 | Isolated non-canonical cWW pair | ||
IL_4V6L_087 | No text annotation | ||
IL_4V6L_177 | No text annotation | ||
IL_4V6L_088 | No text annotation | ||
IL_4V6L_092 | Tandem non-canonical cWW pairs | ||
IL_4V6L_179 | Isolated non-canonical cWW pair | ||
IL_4V6L_111 | No text annotation | ||
IL_4V6L_117 | No text annotation | ||
IL_4V6L_140 | No text annotation | ||
IL_4V6L_141 | No text annotation | ||
IL_4V6L_142 | No text annotation | ||
IL_4V6L_146 | Triple non-canonical cWW pairs | ||
IL_4V6L_147 | Tandem non-canonical cWW pairs | ||
IL_4V6L_149 | Isolated non-canonical cWW with bulges | ||
IL_4V6L_152 | No text annotation | ||
IL_4V6L_153 | No text annotation | ||
IL_4V6L_156 | No text annotation | ||
IL_4V6L_159 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_4V6L_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
J3_4V6L_025 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
J3_4V6L_002 | 1/AA/586:590, 1/AA/649:654, 1/AA/754:755 | No text annotation | homologous J3_6CZR_059 NA | |
J3_4V6L_026 | 1/AA/586:590, 1/AA/649:655, 1/AA/751:755 | No text annotation | homologous J3_6CZR_060 NA | |
J3_4V6L_038 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
J3_4V6L_003 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | ||
J3_4V6L_039 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
J3_4V6L_040 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
J3_4V6L_005 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
J3_4V6L_006 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_6CZR_021 NA | |
J3_4V6L_029 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
J3_4V6L_007 | 1/AA/1003:1006, 1/AA/1023:1027, 1/AA/1034:1037 | No text annotation | ||
J3_4V6L_041 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
J3_4V6L_009 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
J3_4V6L_010 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
J3_4V6L_042 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
J3_4V6L_011 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
J3_4V6L_012 | 1/BA/10:16, 1/BA/68:70, 1/BA/106:110 | No text annotation | homologous J3_7A0S_014 NA | |
J3_4V6L_013 | 1/BB/30:31, 1/BB/474:481, 1/BB/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
J3_4V6L_031 | 1/BB/30:31, 1/BB/474:484, 1/BB/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
J3_4V6L_032 | 1/BB/32:35, 1/BB/445:461, 1/BB/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
J3_4V6L_014 | 1/BB/56:57, 1/BB/70:76, 1/BB/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
J3_4V6L_043 | 1/BB/297:301, 1/BB/316:325, 1/BB/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
J3_4V6L_033 | 1/BB/297:301, 1/BB/316:326, 1/BB/336:341 | No text annotation | ||
J3_4V6L_034 | 1/BB/683:689, 1/BB/773:775, 1/BB/791:794 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
J3_4V6L_016 | 1/BB/698:700, 1/BB/732:736, 1/BB/760:763 | No text annotation | homologous J3_4WF9_003 J3_44724.7 | |
J3_4V6L_017 | 1/BB/1053:1058, 1/BB/1080:1087, 1/BB/1102:1106 | No text annotation | ||
J3_4V6L_018 | 1/BB/1298:1303, 1/BB/1625:1627, 1/BB/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
J3_4V6L_019 | 1/BB/1306:1309, 1/BB/1605:1611, 1/BB/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
J3_4V6L_035 | 1/BB/1344:1350, 1/BB/1381:1385, 1/BB/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
J3_4V6L_036 | 1/BB/1424:1429, 1/BB/1564:1565, 1/BB/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
J3_4V6L_020 | 1/BB/2091:2093, 1/BB/2196:2200, 1/BB/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
J3_4V6L_037 | 1/BB/2282:2284, 1/BB/2384:2395, 1/BB/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
J3_4V6L_021 | 1/BB/2295:2299, 1/BB/2317:2323, 1/BB/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
J3_4V6L_022 | 1/BB/2517:2520, 1/BB/2545:2547, 1/BB/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
J3_4V6L_023 | 1/BB/2789:2791, 1/BB/2805:2806, 1/BB/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
J3_4V6L_024 | 1/BB/2812:2815, 1/BB/2831:2836, 1/BB/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
J4_4V6L_001 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
J4_4V6L_002 | 1/AA/142:146, 1/AA/176:184, 1/AA/193:198, 1/AA/219:221 | No text annotation | ||
J4_4V6L_003 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
J4_4V6L_017 | 1/AB/7:10, 1/AB/25:27, 1/AB/43:49, 1/AB/65:66 | tRNA junction | homologous J4_5HR6_001 J4_70449.29 | |
J4_4V6L_005 | 1/AE/7:10, 1/AE/25:27, 1/AE/43:49, 1/AE/65:66 | tRNA junction | homologous J4_1QU2_001 J4_70449.29 | |
J4_4V6L_006 | 1/BB/268:269, 1/BB/370:375, 1/BB/399:406, 1/BB/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
J4_4V6L_018 | 1/BB/297:301, 1/BB/316:319, 1/BB/323:325, 1/BB/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
J4_4V6L_008 | 1/BB/601:604, 1/BB/624:628, 1/BB/635:638, 1/BB/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
J4_4V6L_009 | 1/BB/1262:1277, 1/BB/1293:1296, 1/BB/1644:1648, 1/BB/2009:2017 | No text annotation | ||
J4_4V6L_010 | 1/BB/1310:1314, 1/BB/1338:1343, 1/BB/1404:1405, 1/BB/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
J4_4V6L_011 | 1/BB/1313:1314, 1/BB/1338:1343, 1/BB/1404:1405, 1/BB/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
J4_4V6L_012 | 1/BB/1444:1445, 1/BB/1466:1467, 1/BB/1525:1526, 1/BB/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
J4_4V6L_013 | 1/BB/1772:1776, 1/BB/1788:1792, 1/BB/1827:1830, 1/BB/1975:1979 | No text annotation | homologous J4_4WF9_007 J4_61477.5 | |
J4_4V6L_014 | 1/BB/1833:1835, 1/BB/1905:1906, 1/BB/1924:1933, 1/BB/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
J4_4V6L_015 | 1/BB/2285:2289, 1/BB/2343:2347, 1/BB/2370:2372, 1/BB/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
J4_4V6L_016 | 1/BB/2643:2647, 1/BB/2673:2676, 1/BB/2731:2735, 1/BB/2769:2771 | No text annotation | ||
J5_4V6L_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
J5_4V6L_002 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
J5_4V6L_003 | 1/BB/47:54, 1/BB/116:121, 1/BB/130:131, 1/BB/148:150, 1/BB/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
J5_4V6L_004 | 1/BB/584:589, 1/BB/668:671, 1/BB/809:812, 1/BB/1195:1196, 1/BB/1250:1256 | No text annotation | homologous J5_4WF9_004 J5_74302.5 | |
J5_4V6L_005 | 1/BB/1674:1682, 1/BB/1706:1707, 1/BB/1751:1752, 1/BB/1756:1764, 1/BB/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
J5_4V6L_006 | 1/BB/2057:2064, 1/BB/2446:2453, 1/BB/2500:2507, 1/BB/2582:2588, 1/BB/2606:2611 | No text annotation | ||
J5_4V6L_007 | 1/BB/2074:2077, 1/BB/2243:2246, 1/BB/2258:2259, 1/BB/2281:2282, 1/BB/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
J6_4V6L_001 | 1/BB/45:46, 1/BB/179:183, 1/BB/214:224, 1/BB/231:235, 1/BB/262:266, 1/BB/426:433 | No text annotation | ||
J6_4V6L_002 | 1/BB/2074:2077, 1/BB/2243:2246, 1/BB/2258:2259, 1/BB/2281:2284, 1/BB/2384:2395, 1/BB/2421:2435 | No text annotation | ||
J7_4V6L_001 | 1/BB/817:822, 1/BB/835:838, 1/BB/940:946, 1/BB/971:976, 1/BB/987:991, 1/BB/1163:1164, 1/BB/1185:1190 | No text annotation | ||
J10_4V6L_001 | 1/BB/8:15, 1/BB/525:533, 1/BB/560:564, 1/BB/577:579, 1/BB/1261:1262, 1/BB/2017:2024, 1/BB/2039:2043, 1/BB/2625:2630, 1/BB/2788:2789, 1/BB/2894:2895 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_4V6L_027 | No text annotation | ||
J3_4V6L_028 | No text annotation | ||
J3_4V6L_004 | No text annotation | ||
J3_4V6L_008 | No text annotation | ||
J3_4V6L_030 | No text annotation | ||
J3_4V6L_015 | No text annotation | ||
J4_4V6L_004 | No text annotation | ||
J4_4V6L_007 | No text annotation |
Coloring options: