4V6L Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6L_110 | No text annotation | ||
| HL_4V6L_001 | No text annotation | ||
| HL_4V6L_002 | Mini UNCG | ||
| HL_4V6L_003 | GNRA | ||
| HL_4V6L_004 | GNRA | ||
| HL_4V6L_005 | UNCG | ||
| HL_4V6L_006 | GNRA related | ||
| HL_4V6L_007 | GNRA | ||
| HL_4V6L_008 | No text annotation | ||
| HL_4V6L_009 | UNCG | ||
| HL_4V6L_010 | GNRA | ||
| HL_4V6L_011 | UNCG | ||
| HL_4V6L_012 | No text annotation | ||
| HL_4V6L_013 | No text annotation | ||
| HL_4V6L_111 | GNRA variation | ||
| HL_4V6L_014 | GNRA-like with tWH | ||
| HL_4V6L_015 | No text annotation | ||
| HL_4V6L_016 | GNRA | ||
| HL_4V6L_017 | No text annotation | ||
| HL_4V6L_115 | No text annotation | ||
| HL_4V6L_018 | No text annotation | ||
| HL_4V6L_116 | Mini UNCG | ||
| HL_4V6L_019 | GNRA | ||
| HL_4V6L_020 | UNCG variation | ||
| HL_4V6L_021 | tRNA D-loop | ||
| HL_4V6L_117 | No text annotation | ||
| HL_4V6L_022 | GNRA | ||
| HL_4V6L_023 | UNCG | ||
| HL_4V6L_024 | GNRA | ||
| HL_4V6L_025 | T-loop related | ||
| HL_4V6L_026 | No text annotation | ||
| HL_4V6L_027 | GNRA | ||
| HL_4V6L_028 | GNRA | ||
| HL_4V6L_029 | T-loop with 3 stacked bulged bases | ||
| HL_4V6L_030 | No text annotation | ||
| HL_4V6L_031 | UNCG | ||
| HL_4V6L_032 | GNRA | ||
| HL_4V6L_033 | tRNA D-loop | ||
| HL_4V6L_034 | No text annotation | ||
| HL_4V6L_112 | tRNA anticodon loop | ||
| HL_4V6L_035 | T-loop with 2 stacked bulged bases | ||
| HL_4V6L_036 | No text annotation | ||
| HL_4V6L_037 | No text annotation | ||
| HL_4V6L_038 | T-loop with 2 stacked bulged bases | ||
| HL_4V6L_113 | No text annotation | ||
| HL_4V6L_039 | No text annotation | ||
| HL_4V6L_040 | tRNA D-loop | ||
| HL_4V6L_041 | No text annotation | ||
| HL_4V6L_042 | No text annotation | ||
| HL_4V6L_043 | No text annotation | ||
| HL_4V6L_044 | No text annotation | ||
| HL_4V6L_045 | No text annotation | ||
| HL_4V6L_046 | No text annotation | ||
| HL_4V6L_047 | No text annotation | ||
| HL_4V6L_048 | No text annotation | ||
| HL_4V6L_049 | T-loop with 2 stacked bulged bases | ||
| HL_4V6L_050 | No text annotation | ||
| HL_4V6L_051 | T-loop with unstacked turn | ||
| HL_4V6L_052 | No text annotation | ||
| HL_4V6L_053 | No text annotation | ||
| HL_4V6L_054 | GNRA | ||
| HL_4V6L_055 | GNRA | ||
| HL_4V6L_056 | No text annotation | ||
| HL_4V6L_118 | No text annotation | ||
| HL_4V6L_057 | No text annotation | ||
| HL_4V6L_119 | T-loop with 2 stacked bulged bases | ||
| HL_4V6L_058 | No text annotation | ||
| HL_4V6L_059 | GNRA | ||
| HL_4V6L_060 | No text annotation | ||
| HL_4V6L_061 | GNRA wlth tandem sheared | ||
| HL_4V6L_062 | No text annotation | ||
| HL_4V6L_063 | UNCG variation | ||
| HL_4V6L_064 | No text annotation | ||
| HL_4V6L_065 | No text annotation | ||
| HL_4V6L_066 | No text annotation | ||
| HL_4V6L_114 | GNRA | ||
| HL_4V6L_067 | No text annotation | ||
| HL_4V6L_068 | No text annotation | ||
| HL_4V6L_069 | GNRA wlth tandem sheared | ||
| HL_4V6L_070 | No text annotation | ||
| HL_4V6L_071 | GNRA | ||
| HL_4V6L_072 | T-loop with 2 stacked bulged bases | ||
| HL_4V6L_073 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6L_074 | GNRA | ||
| HL_4V6L_075 | No text annotation | ||
| HL_4V6L_076 | No text annotation | ||
| HL_4V6L_077 | No text annotation | ||
| HL_4V6L_078 | UNCG | ||
| HL_4V6L_079 | Mini UNCG | ||
| HL_4V6L_080 | No text annotation | ||
| HL_4V6L_081 | GNRA with extra cWW | ||
| HL_4V6L_082 | UNCG | ||
| HL_4V6L_083 | Mini UNCG | ||
| HL_4V6L_084 | No text annotation | ||
| HL_4V6L_085 | No text annotation | ||
| HL_4V6L_086 | No text annotation | ||
| HL_4V6L_087 | No text annotation | ||
| HL_4V6L_088 | No text annotation | ||
| HL_4V6L_089 | No text annotation | ||
| HL_4V6L_090 | No text annotation | ||
| HL_4V6L_091 | No text annotation | ||
| HL_4V6L_092 | No text annotation | ||
| HL_4V6L_093 | No text annotation | ||
| HL_4V6L_120 | No text annotation | ||
| HL_4V6L_094 | No text annotation | ||
| HL_4V6L_095 | No text annotation | ||
| HL_4V6L_121 | No text annotation | ||
| HL_4V6L_096 | Pseudoknot geometry | ||
| HL_4V6L_097 | GNRA | ||
| HL_4V6L_098 | GNRA | ||
| HL_4V6L_099 | No text annotation | ||
| HL_4V6L_100 | No text annotation | ||
| HL_4V6L_101 | GNRA variation | ||
| HL_4V6L_102 | No text annotation | ||
| HL_4V6L_103 | GNRA | ||
| HL_4V6L_104 | GNRA | ||
| HL_4V6L_105 | Ribsomal LSU H95 | ||
| HL_4V6L_106 | No text annotation | ||
| HL_4V6L_107 | Mini UNCG | ||
| HL_4V6L_108 | No text annotation | ||
| HL_4V6L_109 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6L_001 | Single bulged G | ||
| IL_4V6L_002 | Single bulged A | ||
| IL_4V6L_003 | No text annotation | ||
| IL_4V6L_004 | Minor groove platform | ||
| IL_4V6L_005 | Multiple bulged bases | ||
| IL_4V6L_006 | Minor groove platform with extra cWW | ||
| IL_4V6L_007 | Minor groove platform | ||
| IL_4V6L_008 | Single bulged G | ||
| IL_4V6L_009 | Isolated non-canonical cWW pair | ||
| IL_4V6L_010 | Minor groove platform related | ||
| IL_4V6L_011 | tWH-tWH-tHW-tHW | ||
| IL_4V6L_192 | No text annotation | ||
| IL_4V6L_012 | No text annotation | ||
| IL_4V6L_013 | Kink-turn with non-sequential stacking | ||
| IL_4V6L_193 | No text annotation | ||
| IL_4V6L_014 | No text annotation | ||
| IL_4V6L_015 | No text annotation | ||
| IL_4V6L_016 | Single bulged U | ||
| IL_4V6L_017 | No text annotation | ||
| IL_4V6L_018 | No text annotation | ||
| IL_4V6L_019 | No text annotation | ||
| IL_4V6L_020 | tSH-tHW-tWW | ||
| IL_4V6L_021 | No text annotation | ||
| IL_4V6L_022 | SSU/LSU pseudoknot | ||
| IL_4V6L_023 | Kink-turn related | ||
| IL_4V6L_024 | No text annotation | ||
| IL_4V6L_025 | tSH-tHW-tHS | ||
| IL_4V6L_026 | No text annotation | ||
| IL_4V6L_027 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6L_028 | No text annotation | ||
| IL_4V6L_194 | No text annotation | ||
| IL_4V6L_029 | Major groove platform; stack outside cWW | ||
| IL_4V6L_195 | Minor groove platform | ||
| IL_4V6L_030 | No text annotation | ||
| IL_4V6L_031 | Tandem non-canonical cWW pairs | ||
| IL_4V6L_196 | Triple non-canonical cWW pairs | ||
| IL_4V6L_032 | Kink-turn | ||
| IL_4V6L_033 | Left turn | ||
| IL_4V6L_034 | tSH-tHW-tHS | ||
| IL_4V6L_035 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V6L_036 | Single bulged A | ||
| IL_4V6L_037 | Isolated non-canonical cWW pair | ||
| IL_4V6L_038 | No text annotation | ||
| IL_4V6L_197 | No text annotation | ||
| IL_4V6L_039 | Isolated cWS basepair | ||
| IL_4V6L_171 | Isolated non-canonical cWW pair | ||
| IL_4V6L_040 | Minor groove platform | ||
| IL_4V6L_041 | Minor groove platform | ||
| IL_4V6L_042 | Single stack bend | ||
| IL_4V6L_043 | Single bulged U | ||
| IL_4V6L_044 | Isolated non-canonical cWW pair | ||
| IL_4V6L_045 | No text annotation | ||
| IL_4V6L_046 | Minor groove platform | ||
| IL_4V6L_047 | Tandem non-canonical cWW pairs | ||
| IL_4V6L_048 | No text annotation | ||
| IL_4V6L_049 | Minor groove platform | ||
| IL_4V6L_198 | No text annotation | ||
| IL_4V6L_050 | No text annotation | ||
| IL_4V6L_051 | No text annotation | ||
| IL_4V6L_052 | No text annotation | ||
| IL_4V6L_053 | Double sheared with non-canonical cWW | ||
| IL_4V6L_054 | No text annotation | ||
| IL_4V6L_055 | No text annotation | ||
| IL_4V6L_056 | No text annotation | ||
| IL_4V6L_172 | Isolated non-canonical cWW pair | ||
| IL_4V6L_057 | No text annotation | ||
| IL_4V6L_173 | No text annotation | ||
| IL_4V6L_058 | Isolated non-canonical cWW pair | ||
| IL_4V6L_174 | Tandem non-canonical cWW pairs | ||
| IL_4V6L_059 | No text annotation | ||
| IL_4V6L_060 | Triple sheared related | ||
| IL_4V6L_061 | Single bulged A | ||
| IL_4V6L_062 | No text annotation | ||
| IL_4V6L_175 | Major groove intercalation | ||
| IL_4V6L_063 | Single bulged G, near cWW | ||
| IL_4V6L_064 | No text annotation | ||
| IL_4V6L_199 | No text annotation | ||
| IL_4V6L_065 | No text annotation | ||
| IL_4V6L_066 | Symmetric double minor groove platform | ||
| IL_4V6L_067 | Bacterial 5S Loop E | ||
| IL_4V6L_068 | Triple sheared with non-canonical cWW | ||
| IL_4V6L_069 | Single bulged A | ||
| IL_4V6L_176 | Tandem non-canonical cWW pairs | ||
| IL_4V6L_200 | Minor groove platform | ||
| IL_4V6L_070 | Isolated non-canonical cWW pair | ||
| IL_4V6L_071 | No text annotation | ||
| IL_4V6L_072 | Single stack bend | ||
| IL_4V6L_073 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6L_074 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V6L_075 | No text annotation | ||
| IL_4V6L_076 | No text annotation | ||
| IL_4V6L_077 | No text annotation | ||
| IL_4V6L_078 | No text annotation | ||
| IL_4V6L_079 | Double sheared | ||
| IL_4V6L_201 | Isolated non-canonical cWW pair | ||
| IL_4V6L_080 | AAA cross-strand stack | ||
| IL_4V6L_081 | Isolated non-canonical cWW pair | ||
| IL_4V6L_082 | tHW-tHW cross-strand stack | ||
| IL_4V6L_083 | Single bulged A | ||
| IL_4V6L_084 | No text annotation | ||
| IL_4V6L_085 | Major groove platform | ||
| IL_4V6L_086 | Multiple bulged bases | ||
| IL_4V6L_087 | No text annotation | ||
| IL_4V6L_177 | No text annotation | ||
| IL_4V6L_202 | No text annotation | ||
| IL_4V6L_088 | No text annotation | ||
| IL_4V6L_203 | Single stack bend | ||
| IL_4V6L_089 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6L_090 | Single bulged G | ||
| IL_4V6L_091 | C-loop with bulged stacked A's | ||
| IL_4V6L_178 | Isolated non-canonical cWW pair | ||
| IL_4V6L_092 | Tandem non-canonical cWW pairs | ||
| IL_4V6L_093 | No text annotation | ||
| IL_4V6L_094 | No text annotation | ||
| IL_4V6L_179 | Isolated non-canonical cWW pair | ||
| IL_4V6L_095 | Single bulged C | ||
| IL_4V6L_096 | UAA/GAN | ||
| IL_4V6L_097 | SSU/LSU pseudoknot | ||
| IL_4V6L_098 | Single bulged U | ||
| IL_4V6L_099 | No text annotation | ||
| IL_4V6L_100 | No text annotation | ||
| IL_4V6L_101 | Isolated non-canonical cWW pair | ||
| IL_4V6L_102 | Tandem non-canonical cWW pairs | ||
| IL_4V6L_103 | Kink-turn | ||
| IL_4V6L_104 | No text annotation | ||
| IL_4V6L_105 | Major groove platform | ||
| IL_4V6L_106 | Isolated cWS basepair | ||
| IL_4V6L_107 | No text annotation | ||
| IL_4V6L_108 | Kink-turn | ||
| IL_4V6L_109 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4V6L_110 | Major groove platform; stack outside cWW | ||
| IL_4V6L_180 | C-loop | ||
| IL_4V6L_111 | No text annotation | ||
| IL_4V6L_112 | UAA/GAN | ||
| IL_4V6L_113 | tSH-tHW-tHS | ||
| IL_4V6L_114 | No text annotation | ||
| IL_4V6L_115 | UAA/GAN | ||
| IL_4V6L_181 | No text annotation | ||
| IL_4V6L_116 | Tandem non-canonical cWW pairs | ||
| IL_4V6L_182 | tSH-tHW | ||
| IL_4V6L_117 | No text annotation | ||
| IL_4V6L_118 | No text annotation | ||
| IL_4V6L_119 | tSH-tHW-tHS | ||
| IL_4V6L_120 | No text annotation | ||
| IL_4V6L_121 | No text annotation | ||
| IL_4V6L_122 | UAA/GAN variation | ||
| IL_4V6L_123 | No text annotation | ||
| IL_4V6L_124 | Isolated tWW turn | ||
| IL_4V6L_125 | Major groove platform; stack outside cWW | ||
| IL_4V6L_183 | No text annotation | ||
| IL_4V6L_126 | Intercalated tWH | ||
| IL_4V6L_127 | tSH-tSH-tHH-tHS | ||
| IL_4V6L_128 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V6L_129 | Triple sheared | ||
| IL_4V6L_130 | Single bulged C | ||
| IL_4V6L_131 | Single bulged A | ||
| IL_4V6L_132 | Kink-turn related | ||
| IL_4V6L_133 | No text annotation | ||
| IL_4V6L_134 | Major groove intercalation | ||
| IL_4V6L_135 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6L_184 | No text annotation | ||
| IL_4V6L_136 | UAA/GAN related | ||
| IL_4V6L_137 | Bulged stacked bases | ||
| IL_4V6L_138 | No text annotation | ||
| IL_4V6L_139 | Major groove platform | ||
| IL_4V6L_140 | No text annotation | ||
| IL_4V6L_185 | No text annotation | ||
| IL_4V6L_141 | No text annotation | ||
| IL_4V6L_186 | Single bulged U | ||
| IL_4V6L_142 | No text annotation | ||
| IL_4V6L_143 | Minor groove platform | ||
| IL_4V6L_144 | Isolated tHS basepair with bulges | ||
| IL_4V6L_145 | No text annotation | ||
| IL_4V6L_204 | Isolated non-canonical cWW pair | ||
| IL_4V6L_146 | Triple non-canonical cWW pairs | ||
| IL_4V6L_147 | Tandem non-canonical cWW pairs | ||
| IL_4V6L_205 | Isolated non-canonical cWW pair | ||
| IL_4V6L_148 | No text annotation | ||
| IL_4V6L_187 | No text annotation | ||
| IL_4V6L_149 | Isolated non-canonical cWW with bulges | ||
| IL_4V6L_188 | Single bulged U | ||
| IL_4V6L_150 | Double sheared | ||
| IL_4V6L_151 | Major groove platform | ||
| IL_4V6L_189 | Single stack bend | ||
| IL_4V6L_152 | No text annotation | ||
| IL_4V6L_190 | Major groove platform | ||
| IL_4V6L_153 | No text annotation | ||
| IL_4V6L_191 | Major groove platform | ||
| IL_4V6L_154 | Major groove minor groove platform with extra cWW | ||
| IL_4V6L_155 | Double sheared with non-canonical cWW | ||
| IL_4V6L_206 | Major groove platform | ||
| IL_4V6L_156 | No text annotation | ||
| IL_4V6L_157 | No text annotation | ||
| IL_4V6L_158 | Major groove platform with intercalation | ||
| IL_4V6L_159 | No text annotation | ||
| IL_4V6L_160 | Single bulged A | ||
| IL_4V6L_161 | tSH-tHS-tHW | ||
| IL_4V6L_162 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V6L_163 | C-loop | ||
| IL_4V6L_164 | UAA/GAN related, with intercalation | ||
| IL_4V6L_165 | Multiple bulged bases | ||
| IL_4V6L_166 | UAA/GAN with extra cWW | ||
| IL_4V6L_167 | No text annotation | ||
| IL_4V6L_168 | Major groove intercalation | ||
| IL_4V6L_169 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V6L_170 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6L_001 | No text annotation | ||
| J3_4V6L_025 | No text annotation | ||
| J3_4V6L_002 | No text annotation | ||
| J3_4V6L_026 | No text annotation | ||
| J3_4V6L_038 | No text annotation | ||
| J3_4V6L_027 | No text annotation | ||
| J3_4V6L_003 | No text annotation | ||
| J3_4V6L_028 | No text annotation | ||
| J3_4V6L_039 | No text annotation | ||
| J3_4V6L_040 | No text annotation | ||
| J3_4V6L_004 | No text annotation | ||
| J3_4V6L_005 | No text annotation | ||
| J3_4V6L_006 | No text annotation | ||
| J3_4V6L_029 | No text annotation | ||
| J3_4V6L_007 | No text annotation | ||
| J3_4V6L_041 | No text annotation | ||
| J3_4V6L_008 | No text annotation | ||
| J3_4V6L_009 | No text annotation | ||
| J3_4V6L_010 | No text annotation | ||
| J3_4V6L_042 | No text annotation | ||
| J3_4V6L_030 | No text annotation | ||
| J3_4V6L_011 | No text annotation | ||
| J3_4V6L_012 | No text annotation | ||
| J3_4V6L_013 | No text annotation | ||
| J3_4V6L_031 | No text annotation | ||
| J3_4V6L_032 | No text annotation | ||
| J3_4V6L_014 | No text annotation | ||
| J3_4V6L_043 | No text annotation | ||
| J3_4V6L_033 | No text annotation | ||
| J3_4V6L_015 | No text annotation | ||
| J3_4V6L_034 | No text annotation | ||
| J3_4V6L_016 | No text annotation | ||
| J3_4V6L_017 | No text annotation | ||
| J3_4V6L_018 | No text annotation | ||
| J3_4V6L_019 | No text annotation | ||
| J3_4V6L_035 | No text annotation | ||
| J3_4V6L_036 | No text annotation | ||
| J3_4V6L_020 | No text annotation | ||
| J3_4V6L_037 | No text annotation | ||
| J3_4V6L_021 | No text annotation | ||
| J3_4V6L_022 | No text annotation | ||
| J3_4V6L_023 | No text annotation | ||
| J3_4V6L_024 | No text annotation | ||
| J4_4V6L_001 | No text annotation | ||
| J4_4V6L_002 | No text annotation | ||
| J4_4V6L_003 | No text annotation | ||
| J4_4V6L_017 | tRNA junction | ||
| J4_4V6L_004 | No text annotation | ||
| J4_4V6L_005 | tRNA junction | ||
| J4_4V6L_006 | No text annotation | ||
| J4_4V6L_018 | No text annotation | ||
| J4_4V6L_007 | No text annotation | ||
| J4_4V6L_008 | No text annotation | ||
| J4_4V6L_009 | No text annotation | ||
| J4_4V6L_010 | No text annotation | ||
| J4_4V6L_011 | No text annotation | ||
| J4_4V6L_012 | No text annotation | ||
| J4_4V6L_013 | No text annotation | ||
| J4_4V6L_014 | No text annotation | ||
| J4_4V6L_015 | No text annotation | ||
| J4_4V6L_016 | No text annotation | ||
| J5_4V6L_001 | No text annotation | ||
| J5_4V6L_002 | No text annotation | ||
| J5_4V6L_003 | No text annotation | ||
| J5_4V6L_004 | No text annotation | ||
| J5_4V6L_005 | No text annotation | ||
| J5_4V6L_006 | No text annotation | ||
| J5_4V6L_007 | No text annotation | ||
| J6_4V6L_001 | No text annotation | ||
| J6_4V6L_002 | No text annotation | ||
| J7_4V6L_001 | No text annotation | ||
| J10_4V6L_001 | No text annotation |
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