HL_4V6L_008

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

4V6L|1|AA|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.4587

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V6L|1|AA|A|320
4V6L|1|AA|A|321
4V6L|1|AA|C|322
4V6L|1|AA|U|323
4V6L|1|AA|G|324
4V6L|1|AA|A|325
4V6L|1|AA|G|326
4V6L|1|AA|A|327
4V6L|1|AA|C|328
4V6L|1|AA|A|329
4V6L|1|AA|C|330
4V6L|1|AA|G|331
4V6L|1|AA|G|332
4V6L|1|AA|U|333

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S16

Chain AX

30S ribosomal protein S20