HL_4V6L_026

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

4V6L|1|AA|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_026 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.3695

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

4V6L|1|AA|G|1134
4V6L|1|AA|U|1135
4V6L|1|AA|C|1136
4V6L|1|AA|C|1137
4V6L|1|AA|G|1138
4V6L|1|AA|G|1139
4V6L|1|AA|C|1140

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S10