HL_4V6L_036

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CAG(H2U)CGG(H2U)AG

Length

10 nucleotides

Bulged bases

4V6L|1|AE|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_036 not in the Motif Atlas

Homologous match to HL_4YYE_001

Geometric discrepancy: 0.2498

The information below is about HL_4YYE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6L|1|AE|C|13
4V6L|1|AE|A|14
4V6L|1|AE|G|15
4V6L|1|AE|H2U|16
4V6L|1|AE|C|17
4V6L|1|AE|G|18
4V6L|1|AE|G|19
4V6L|1|AE|H2U|20
4V6L|1|AE|A|21
4V6L|1|AE|G|22

Current chains

Chain AE

A/T-site tRNA Phe

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S ribosomal protein L5