HL_4V6L_038
3D structure
- PDB id
- 4V6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.2 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6L_038 not in the Motif Atlas
- Homologous match to HL_5IBB_211
- Geometric discrepancy: 0.389
- The information below is about HL_5IBB_211
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
4V6L|1|AE|G|53
4V6L|1|AE|5MU|54
4V6L|1|AE|PSU|55
4V6L|1|AE|C|56
4V6L|1|AE|G|57
4V6L|1|AE|A|58
4V6L|1|AE|U|59
4V6L|1|AE|U|60
4V6L|1|AE|C|61
Current chains
- Chain AE
- A/T-site tRNA Phe
Nearby chains
- Chain BG
- 50S ribosomal protein L5
Coloring options: