HL_4V6L_040

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4V6L|1|BA|C|88, 4V6L|1|BA|U|89

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_040 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.2538

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4V6L|1|BA|G|85
4V6L|1|BA|G|86
4V6L|1|BA|U|87
4V6L|1|BA|C|88
4V6L|1|BA|U|89
4V6L|1|BA|C|90
4V6L|1|BA|C|91

Current chains

Chain BA

50S ribosomal RNA 5S

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BN

50S ribosomal protein L16

Chain Ba

50S ribosomal protein L30