HL_4V6L_048

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_048 not in the Motif Atlas

Homologous match to HL_7RQB_008

Geometric discrepancy: 0.1755

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

4V6L|1|BB|C|246
4V6L|1|BB|G|247
4V6L|1|BB|G|248
4V6L|1|BB|C|249
4V6L|1|BB|G|250
4V6L|1|BB|A|251
4V6L|1|BB|G|252

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BM

50S ribosomal protein L15

Chain BY

50S ribosomal protein L28

Chain Bf

50S ribosomal protein L35