HL_4V6L_054

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_054 not in the Motif Atlas

Homologous match to HL_7RQB_015

Geometric discrepancy: 0.1285

The information below is about HL_7RQB_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V6L|1|BB|C|462
4V6L|1|BB|G|463
4V6L|1|BB|U|464
4V6L|1|BB|G|465
4V6L|1|BB|A|466
4V6L|1|BB|G|467

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BF

50S ribosomal protein L4

Chain Be

50S ribosomal protein L34