HL_4V6L_064

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4V6L|1|BB|U|827, 4V6L|1|BB|G|830

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_064 not in the Motif Atlas

Homologous match to HL_7A0S_024

Geometric discrepancy: 0.1613

The information below is about HL_7A0S_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

4V6L|1|BB|U|826
4V6L|1|BB|U|827
4V6L|1|BB|U|828
4V6L|1|BB|A|829
4V6L|1|BB|G|830
4V6L|1|BB|G|831

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BM

50S ribosomal protein L15