HL_4V6L_065

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_065 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.2685

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

4V6L|1|BB|C|885
4V6L|1|BB|A|886
4V6L|1|BB|U|887
4V6L|1|BB|C|888
4V6L|1|BB|C|889
4V6L|1|BB|C|890
4V6L|1|BB|G|891

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain AQ

30S ribosomal protein S13

Chain AW

30S ribosomal protein S19