HL_4V6L_068

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4V6L|1|BB|A|1067, 4V6L|1|BB|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_068 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.3383

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V6L|1|BB|C|1064
4V6L|1|BB|U|1065
4V6L|1|BB|U|1066
4V6L|1|BB|A|1067
4V6L|1|BB|G|1068
4V6L|1|BB|A|1069
4V6L|1|BB|A|1070
4V6L|1|BB|G|1071
4V6L|1|BB|C|1072
4V6L|1|BB|A|1073
4V6L|1|BB|G|1074

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain BJ

50S ribosomal protein L11