HL_4V6L_093

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GACUG(OMG)GGCGGUC

Length

13 nucleotides

Bulged bases

4V6L|1|BB|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6L|1|BB|G|2246
4V6L|1|BB|A|2247
4V6L|1|BB|C|2248
4V6L|1|BB|U|2249
4V6L|1|BB|G|2250
4V6L|1|BB|OMG|2251
4V6L|1|BB|G|2252
4V6L|1|BB|G|2253
4V6L|1|BB|C|2254
4V6L|1|BB|G|2255
4V6L|1|BB|G|2256
4V6L|1|BB|U|2257
4V6L|1|BB|C|2258

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain AE

Transfer RNA; tRNA

Chain BN

50S ribosomal protein L16

Chain BX

50S ribosomal protein L27