HL_4V6L_104

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_104 not in the Motif Atlas

Homologous match to HL_4WF9_060

Geometric discrepancy: 0.3522

The information below is about HL_4WF9_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6L|1|BB|C|2658
4V6L|1|BB|G|2659
4V6L|1|BB|A|2660
4V6L|1|BB|G|2661
4V6L|1|BB|A|2662
4V6L|1|BB|G|2663

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain AC

Elongation factor Tu 2

Chain BH

50S ribosomal protein L6