HL_4V6L_108

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

4V6L|1|BB|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_108 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1823

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V6L|1|BB|G|2819
4V6L|1|BB|A|2820
4V6L|1|BB|A|2821
4V6L|1|BB|G|2822
4V6L|1|BB|A|2823
4V6L|1|BB|C|2824
4V6L|1|BB|G|2825
4V6L|1|BB|A|2826
4V6L|1|BB|C|2827

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L17

Chain Bc

50S ribosomal protein L32