HL_4V6L_116

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_116 not in the Motif Atlas

Homologous match to HL_4LFB_018

Geometric discrepancy: 0.5927

The information below is about HL_4LFB_018

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V6L|1|AA|C|840
4V6L|1|AA|C|841
4V6L|1|AA|U|842
4V6L|1|AA|U|843
4V6L|1|AA|G|844
4V6L|1|AA|A|845
4V6L|1|AA|G|846

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AF

30S ribosomal protein S2

Chain AV

30S ribosomal protein S18