HL_4V6M_026

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_026 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.3295

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

4V6M|1|AA|G|1134
4V6M|1|AA|U|1135
4V6M|1|AA|C|1136
4V6M|1|AA|C|1137
4V6M|1|AA|G|1138
4V6M|1|AA|G|1139
4V6M|1|AA|C|1140

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10