4V6M Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6M_001 | No text annotation | ||
| HL_4V6M_002 | No text annotation | ||
| HL_4V6M_003 | GNRA | ||
| HL_4V6M_004 | GNRA | ||
| HL_4V6M_005 | UNCG | ||
| HL_4V6M_006 | GNRA related | ||
| HL_4V6M_007 | GNRA | ||
| HL_4V6M_008 | No text annotation | ||
| HL_4V6M_009 | UNCG | ||
| HL_4V6M_010 | GNRA | ||
| HL_4V6M_011 | UNCG | ||
| HL_4V6M_012 | No text annotation | ||
| HL_4V6M_013 | Externally structured | ||
| HL_4V6M_014 | GNRA-like with tWH | ||
| HL_4V6M_015 | No text annotation | ||
| HL_4V6M_016 | GNRA | ||
| HL_4V6M_017 | No text annotation | ||
| HL_4V6M_018 | No text annotation | ||
| HL_4V6M_019 | GNRA | ||
| HL_4V6M_020 | GNRA | ||
| HL_4V6M_021 | No text annotation | ||
| HL_4V6M_022 | GNRA | ||
| HL_4V6M_023 | UNCG | ||
| HL_4V6M_024 | GNRA | ||
| HL_4V6M_025 | T-loop related | ||
| HL_4V6M_026 | No text annotation | ||
| HL_4V6M_027 | GNRA | ||
| HL_4V6M_028 | GNRA | ||
| HL_4V6M_029 | T-loop with 3 stacked bulged bases | ||
| HL_4V6M_030 | No text annotation | ||
| HL_4V6M_031 | UNCG | ||
| HL_4V6M_032 | GNRA | ||
| HL_4V6M_033 | No text annotation | ||
| HL_4V6M_034 | tRNA anticodon loop | ||
| HL_4V6M_035 | T-loop with 2 stacked bulged bases | ||
| HL_4V6M_107 | No text annotation | ||
| HL_4V6M_036 | No text annotation | ||
| HL_4V6M_037 | Mini UNCG | ||
| HL_4V6M_038 | No text annotation | ||
| HL_4V6M_039 | No text annotation | ||
| HL_4V6M_040 | No text annotation | ||
| HL_4V6M_041 | UNCG | ||
| HL_4V6M_042 | No text annotation | ||
| HL_4V6M_043 | No text annotation | ||
| HL_4V6M_044 | No text annotation | ||
| HL_4V6M_045 | No text annotation | ||
| HL_4V6M_046 | T-loop with 2 stacked bulged bases | ||
| HL_4V6M_047 | No text annotation | ||
| HL_4V6M_048 | T-loop with unstacked turn | ||
| HL_4V6M_049 | No text annotation | ||
| HL_4V6M_050 | Pseudoknot geometry | ||
| HL_4V6M_051 | GNRA | ||
| HL_4V6M_052 | GNRA | ||
| HL_4V6M_053 | No text annotation | ||
| HL_4V6M_054 | T-loop with 2 stacked bulged bases | ||
| HL_4V6M_055 | No text annotation | ||
| HL_4V6M_056 | GNRA | ||
| HL_4V6M_057 | GNRA | ||
| HL_4V6M_058 | GNRA wlth tandem sheared | ||
| HL_4V6M_059 | No text annotation | ||
| HL_4V6M_060 | No text annotation | ||
| HL_4V6M_061 | No text annotation | ||
| HL_4V6M_062 | No text annotation | ||
| HL_4V6M_063 | GNRA | ||
| HL_4V6M_064 | No text annotation | ||
| HL_4V6M_065 | No text annotation | ||
| HL_4V6M_066 | No text annotation | ||
| HL_4V6M_067 | No text annotation | ||
| HL_4V6M_068 | GNRA | ||
| HL_4V6M_069 | T-loop with 2 stacked bulged bases | ||
| HL_4V6M_070 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6M_071 | GNRA | ||
| HL_4V6M_072 | No text annotation | ||
| HL_4V6M_073 | No text annotation | ||
| HL_4V6M_074 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6M_075 | UNCG | ||
| HL_4V6M_076 | Mini UNCG | ||
| HL_4V6M_077 | No text annotation | ||
| HL_4V6M_078 | GNRA | ||
| HL_4V6M_079 | UNCG | ||
| HL_4V6M_080 | No text annotation | ||
| HL_4V6M_081 | No text annotation | ||
| HL_4V6M_082 | No text annotation | ||
| HL_4V6M_083 | GNRA related | ||
| HL_4V6M_084 | GNRA variation | ||
| HL_4V6M_085 | No text annotation | ||
| HL_4V6M_086 | No text annotation | ||
| HL_4V6M_087 | No text annotation | ||
| HL_4V6M_088 | No text annotation | ||
| HL_4V6M_089 | No text annotation | ||
| HL_4V6M_090 | No text annotation | ||
| HL_4V6M_091 | No text annotation | ||
| HL_4V6M_092 | No text annotation | ||
| HL_4V6M_093 | Pseudoknot geometry | ||
| HL_4V6M_094 | GNRA | ||
| HL_4V6M_095 | GNRA | ||
| HL_4V6M_096 | No text annotation | ||
| HL_4V6M_097 | No text annotation | ||
| HL_4V6M_098 | No text annotation | ||
| HL_4V6M_099 | No text annotation | ||
| HL_4V6M_100 | GNRA | ||
| HL_4V6M_101 | GNRA | ||
| HL_4V6M_102 | Ribsomal LSU H95 | ||
| HL_4V6M_103 | No text annotation | ||
| HL_4V6M_104 | Mini UNCG | ||
| HL_4V6M_105 | No text annotation | ||
| HL_4V6M_106 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6M_001 | Single bulged G | ||
| IL_4V6M_002 | Single bulged A | ||
| IL_4V6M_003 | No text annotation | ||
| IL_4V6M_004 | Minor groove platform | ||
| IL_4V6M_005 | Multiple bulged bases | ||
| IL_4V6M_006 | Minor groove platform with extra cWW | ||
| IL_4V6M_007 | Minor groove platform | ||
| IL_4V6M_008 | Major groove intercalation | ||
| IL_4V6M_009 | Isolated non-canonical cWW pair | ||
| IL_4V6M_010 | No text annotation | ||
| IL_4V6M_011 | Isolated cWH basepair | ||
| IL_4V6M_012 | tWH-tWH-tHW-tHW | ||
| IL_4V6M_013 | Minor groove platform | ||
| IL_4V6M_014 | Kink-turn with non-sequential stacking | ||
| IL_4V6M_015 | No text annotation | ||
| IL_4V6M_016 | C-loop | ||
| IL_4V6M_017 | Single bulged U | ||
| IL_4V6M_018 | C-loop | ||
| IL_4V6M_019 | Single bulged G | ||
| IL_4V6M_020 | No text annotation | ||
| IL_4V6M_021 | No text annotation | ||
| IL_4V6M_022 | tSH-tHW-tWW | ||
| IL_4V6M_023 | No text annotation | ||
| IL_4V6M_024 | Single stack bend | ||
| IL_4V6M_025 | Single bulged A | ||
| IL_4V6M_026 | SSU/LSU pseudoknot | ||
| IL_4V6M_027 | Kink-turn related | ||
| IL_4V6M_028 | No text annotation | ||
| IL_4V6M_029 | tSH-tHW-tHS | ||
| IL_4V6M_030 | Major groove platform | ||
| IL_4V6M_031 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6M_032 | No text annotation | ||
| IL_4V6M_033 | Major groove platform; stack outside cWW | ||
| IL_4V6M_034 | Single stack bend | ||
| IL_4V6M_035 | Tandem non-canonical cWW pairs | ||
| IL_4V6M_182 | Triple non-canonical cWW pairs | ||
| IL_4V6M_036 | No text annotation | ||
| IL_4V6M_037 | Kink-turn | ||
| IL_4V6M_183 | Kink-turn | ||
| IL_4V6M_038 | Left turn | ||
| IL_4V6M_039 | tSH-tHW-tHS | ||
| IL_4V6M_040 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V6M_041 | Single bulged A | ||
| IL_4V6M_042 | Single bulged G | ||
| IL_4V6M_043 | Minor groove platform | ||
| IL_4V6M_044 | Minor groove platform | ||
| IL_4V6M_045 | Minor groove platform | ||
| IL_4V6M_046 | Single stack bend | ||
| IL_4V6M_047 | Single bulged U | ||
| IL_4V6M_048 | Isolated cWS basepair | ||
| IL_4V6M_049 | Minor groove platform | ||
| IL_4V6M_050 | Single bulged A | ||
| IL_4V6M_051 | Isolated non-canonical cWW pair | ||
| IL_4V6M_052 | No text annotation | ||
| IL_4V6M_053 | Minor groove platform | ||
| IL_4V6M_054 | No text annotation | ||
| IL_4V6M_055 | No text annotation | ||
| IL_4V6M_056 | 180 degree turn | ||
| IL_4V6M_057 | Double sheared with non-canonical cWW | ||
| IL_4V6M_058 | No text annotation | ||
| IL_4V6M_059 | No text annotation | ||
| IL_4V6M_060 | No text annotation | ||
| IL_4V6M_061 | Isolated non-canonical cWW pair | ||
| IL_4V6M_062 | Decoding loop related | ||
| IL_4V6M_063 | Isolated non-canonical cWW pair | ||
| IL_4V6M_064 | Double sheared | ||
| IL_4V6M_065 | Triple sheared related | ||
| IL_4V6M_066 | Single bulged A | ||
| IL_4V6M_067 | No text annotation | ||
| IL_4V6M_068 | Self complementary | ||
| IL_4V6M_069 | Major groove intercalation | ||
| IL_4V6M_070 | No text annotation | ||
| IL_4V6M_071 | No text annotation | ||
| IL_4V6M_072 | Symmetric double minor groove platform | ||
| IL_4V6M_073 | Bacterial 5S Loop E | ||
| IL_4V6M_074 | Triple sheared with non-canonical cWW | ||
| IL_4V6M_075 | Single bulged A | ||
| IL_4V6M_076 | Minor groove platform | ||
| IL_4V6M_077 | No text annotation | ||
| IL_4V6M_184 | Kink-turn | ||
| IL_4V6M_078 | Single stack bend | ||
| IL_4V6M_079 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6M_080 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V6M_081 | No text annotation | ||
| IL_4V6M_082 | No text annotation | ||
| IL_4V6M_083 | No text annotation | ||
| IL_4V6M_084 | No text annotation | ||
| IL_4V6M_085 | Double sheared | ||
| IL_4V6M_086 | Isolated non-canonical cWW pair | ||
| IL_4V6M_087 | AAA cross-strand stack | ||
| IL_4V6M_088 | Isolated non-canonical cWW pair | ||
| IL_4V6M_089 | tHW-tHW cross-strand stack | ||
| IL_4V6M_090 | Single bulged A | ||
| IL_4V6M_091 | Single bulged G | ||
| IL_4V6M_092 | Triple sheared | ||
| IL_4V6M_093 | Major groove platform | ||
| IL_4V6M_094 | Multiple bulged bases | ||
| IL_4V6M_095 | Single stack bend | ||
| IL_4V6M_096 | No text annotation | ||
| IL_4V6M_097 | Single stack bend | ||
| IL_4V6M_098 | Isolated non-canonical cWW pair | ||
| IL_4V6M_185 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6M_099 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6M_100 | Single bulged G | ||
| IL_4V6M_101 | C-loop with bulged stacked A's | ||
| IL_4V6M_102 | Isolated non-canonical cWW pair | ||
| IL_4V6M_103 | No text annotation | ||
| IL_4V6M_104 | Tandem non-canonical cWW pairs | ||
| IL_4V6M_105 | Single bulged C | ||
| IL_4V6M_106 | UAA/GAN | ||
| IL_4V6M_107 | SSU/LSU pseudoknot | ||
| IL_4V6M_108 | Single bulged U | ||
| IL_4V6M_109 | Kink-turn related | ||
| IL_4V6M_110 | No text annotation | ||
| IL_4V6M_111 | Isolated non-canonical cWW pair | ||
| IL_4V6M_112 | Tandem non-canonical cWW pairs | ||
| IL_4V6M_113 | Kink-turn | ||
| IL_4V6M_186 | No text annotation | ||
| IL_4V6M_114 | No text annotation | ||
| IL_4V6M_115 | Major groove platform | ||
| IL_4V6M_116 | Isolated cWS basepair | ||
| IL_4V6M_117 | No text annotation | ||
| IL_4V6M_118 | Kink-turn | ||
| IL_4V6M_119 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6M_120 | Major groove platform; stack outside cWW | ||
| IL_4V6M_121 | C-loop | ||
| IL_4V6M_122 | UAA/GAN | ||
| IL_4V6M_123 | tSH-tHW-tHS | ||
| IL_4V6M_124 | No text annotation | ||
| IL_4V6M_125 | UAA/GAN | ||
| IL_4V6M_126 | Tandem non-canonical cWW pairs | ||
| IL_4V6M_127 | tSH-tHW | ||
| IL_4V6M_128 | No text annotation | ||
| IL_4V6M_129 | tSH-tHW-tHS | ||
| IL_4V6M_130 | No text annotation | ||
| IL_4V6M_131 | Single bulged A | ||
| IL_4V6M_132 | UAA/GAN variation | ||
| IL_4V6M_133 | No text annotation | ||
| IL_4V6M_134 | Isolated tWW turn | ||
| IL_4V6M_135 | Major groove platform; stack outside cWW | ||
| IL_4V6M_187 | No text annotation | ||
| IL_4V6M_136 | Intercalated tWH | ||
| IL_4V6M_137 | tSH-tSH-tHH-tHS | ||
| IL_4V6M_138 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V6M_139 | Triple sheared | ||
| IL_4V6M_140 | Single bulged C | ||
| IL_4V6M_141 | Single bulged A | ||
| IL_4V6M_142 | Kink-turn related | ||
| IL_4V6M_143 | Minor groove platform, major groove intercalation | ||
| IL_4V6M_144 | Major groove intercalation | ||
| IL_4V6M_145 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6M_188 | No text annotation | ||
| IL_4V6M_146 | UAA/GAN variation | ||
| IL_4V6M_147 | Multiple bulged bases | ||
| IL_4V6M_148 | No text annotation | ||
| IL_4V6M_149 | Major groove platform | ||
| IL_4V6M_150 | No text annotation | ||
| IL_4V6M_151 | Single bulged U | ||
| IL_4V6M_152 | Minor groove platform | ||
| IL_4V6M_153 | Isolated tHS basepair with bulges | ||
| IL_4V6M_154 | Isolated non-canonical cWW pair | ||
| IL_4V6M_155 | No text annotation | ||
| IL_4V6M_156 | Isolated non-canonical cWW pair | ||
| IL_4V6M_157 | No text annotation | ||
| IL_4V6M_189 | No text annotation | ||
| IL_4V6M_190 | No text annotation | ||
| IL_4V6M_158 | Single bulged U | ||
| IL_4V6M_159 | No text annotation | ||
| IL_4V6M_160 | Double sheared | ||
| IL_4V6M_161 | Major groove intercalation | ||
| IL_4V6M_162 | Single stack bend | ||
| IL_4V6M_163 | Major groove platform | ||
| IL_4V6M_164 | Major groove platform | ||
| IL_4V6M_165 | Major groove minor groove platform with extra cWW | ||
| IL_4V6M_166 | Double sheared with non-canonical cWW | ||
| IL_4V6M_167 | Major groove platform | ||
| IL_4V6M_168 | Isolated non-canonical cWW with bulges | ||
| IL_4V6M_169 | No text annotation | ||
| IL_4V6M_170 | Major groove platform with intercalation | ||
| IL_4V6M_171 | Single bulged A | ||
| IL_4V6M_172 | tSH-tHS-tHW | ||
| IL_4V6M_173 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V6M_174 | C-loop | ||
| IL_4V6M_175 | UAA/GAN related, with intercalation | ||
| IL_4V6M_176 | Multiple bulged bases | ||
| IL_4V6M_177 | UAA/GAN with extra cWW | ||
| IL_4V6M_178 | No text annotation | ||
| IL_4V6M_179 | Major groove intercalation | ||
| IL_4V6M_180 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V6M_181 | tHS double platform |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6M_001 | No text annotation | ||
| J3_4V6M_028 | No text annotation | ||
| J3_4V6M_002 | No text annotation | ||
| J3_4V6M_029 | No text annotation | ||
| J3_4V6M_003 | No text annotation | ||
| J3_4V6M_004 | No text annotation | ||
| J3_4V6M_005 | No text annotation | ||
| J3_4V6M_006 | No text annotation | ||
| J3_4V6M_007 | No text annotation | ||
| J3_4V6M_008 | No text annotation | ||
| J3_4V6M_030 | No text annotation | ||
| J3_4V6M_009 | No text annotation | ||
| J3_4V6M_010 | No text annotation | ||
| J3_4V6M_037 | No text annotation | ||
| J3_4V6M_011 | No text annotation | ||
| J3_4V6M_012 | No text annotation | ||
| J3_4V6M_031 | No text annotation | ||
| J3_4V6M_013 | No text annotation | ||
| J3_4V6M_014 | No text annotation | ||
| J3_4V6M_015 | No text annotation | ||
| J3_4V6M_032 | No text annotation | ||
| J3_4V6M_033 | No text annotation | ||
| J3_4V6M_016 | No text annotation | ||
| J3_4V6M_017 | No text annotation | ||
| J3_4V6M_018 | No text annotation | ||
| J3_4V6M_019 | No text annotation | ||
| J3_4V6M_020 | No text annotation | ||
| J3_4V6M_021 | No text annotation | ||
| J3_4V6M_022 | No text annotation | ||
| J3_4V6M_034 | No text annotation | ||
| J3_4V6M_023 | Kink-turn 3-way junction | ||
| J3_4V6M_035 | No text annotation | ||
| J3_4V6M_024 | No text annotation | ||
| J3_4V6M_036 | No text annotation | ||
| J3_4V6M_025 | No text annotation | ||
| J3_4V6M_026 | No text annotation | ||
| J3_4V6M_027 | No text annotation | ||
| J4_4V6M_001 | No text annotation | ||
| J4_4V6M_002 | No text annotation | ||
| J4_4V6M_003 | No text annotation | ||
| J4_4V6M_004 | tRNA junction | ||
| J4_4V6M_005 | No text annotation | ||
| J4_4V6M_006 | No text annotation | ||
| J4_4V6M_007 | No text annotation | ||
| J4_4V6M_008 | No text annotation | ||
| J4_4V6M_009 | No text annotation | ||
| J4_4V6M_010 | No text annotation | ||
| J4_4V6M_011 | No text annotation | ||
| J4_4V6M_012 | No text annotation | ||
| J4_4V6M_013 | No text annotation | ||
| J4_4V6M_014 | No text annotation | ||
| J4_4V6M_015 | No text annotation | ||
| J5_4V6M_001 | No text annotation | ||
| J5_4V6M_002 | No text annotation | ||
| J5_4V6M_003 | No text annotation | ||
| J5_4V6M_004 | No text annotation | ||
| J5_4V6M_005 | No text annotation | ||
| J5_4V6M_006 | No text annotation | ||
| J5_4V6M_007 | No text annotation | ||
| J5_4V6M_008 | No text annotation | ||
| J5_4V6M_009 | No text annotation | ||
| J6_4V6M_001 | No text annotation | ||
| J6_4V6M_002 | No text annotation | ||
| J7_4V6M_001 | No text annotation | ||
| J7_4V6M_002 | No text annotation |
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