HL_4V6M_038

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_038 not in the Motif Atlas

Homologous match to HL_5J7L_134

Geometric discrepancy: 0.4851

The information below is about HL_5J7L_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35677.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6M|1|B8|U|59
4V6M|1|B8|G|60
4V6M|1|B8|C|61
4V6M|1|B8|U|62
4V6M|1|B8|A|63
4V6M|1|B8|A|64
4V6M|1|B8|U|65
4V6M|1|B8|C|66
4V6M|1|B8|U|67
4V6M|1|B8|G|68

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BA

Preprotein translocase secY subunit

Chain BT

50S ribosomal protein L23

Chain BY

50S ribosomal protein L29