HL_4V6M_041

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

4V6M|1|B8|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_041 not in the Motif Atlas

Geometric match to HL_1NBS_006

Geometric discrepancy: 0.278

The information below is about HL_1NBS_006

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V6M|1|B8|U|137
4V6M|1|B8|U|138
4V6M|1|B8|U|139
4V6M|1|B8|C|140
4V6M|1|B8|G|141
4V6M|1|B8|A|142

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BT

50S ribosomal protein L23