HL_4V6M_048

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4V6M|1|B8|G|329, 4V6M|1|B8|A|330, 4V6M|1|B8|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_048 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.172

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V6M|1|B8|G|327
4V6M|1|B8|U|328
4V6M|1|B8|G|329
4V6M|1|B8|A|330
4V6M|1|B8|C|331
4V6M|1|B8|A|332
4V6M|1|B8|G|333
4V6M|1|B8|C|334
4V6M|1|B8|C|335

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24