HL_4V6M_050

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4V6M|1|B8|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_050 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0891

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V6M|1|B8|G|410
4V6M|1|B8|G|411
4V6M|1|B8|A|412
4V6M|1|B8|C|413
4V6M|1|B8|C|414
4V6M|1|B8|A|415
4V6M|1|B8|U|416
4V6M|1|B8|C|417

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains